FvH4_5g17620

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011991
Physical Location & Seq
Reverse (-)
10077647 .. 10079549
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17620.t1

Sequence Viewer

Length: 621 bp
ATGGGCCTCCTTCTATCCAGAAATATTATAGCAAGTTACATTTTCTCCTCTCCACTTTTCTCCCAGAAAAATGGTGGTATTCCCATGCAATTGGAGAACATGGTCTCCTTGGTTTCCCGGACGGGAAGACATTTGCAGCGCTACGATAAAGGCTGCCGTCAAGTTGTAGGATGCATACCCTACAGATATAGGCAAACAGAACAAGAGTCTTCGTCTGTGGAGGATATAGAAGTTCTTGTGATTAGTTCACAAAAGGGTCAAGGAATTTTGTTCCCAAAGGGAGGTTGGGAACTTGATGAGTCAATTGAAGAAGCGGCTTGCAGAGAAACGCTAGAGGAGGCCGGTGTGACTGGTCATCTTGAGCTGCCAATATTGGGCAAATGGCCTTACAAGAGTAAAAGCCAGGGCACTTTTCATGAGGGGTACATGTTCCCTTTGCTTGTCAACAAGCAGTTAGAGTCTTGGCCTGAGAAGACCGTCAGAAAACGAGAATGGATGACTATTGCTGACGCTAAAGAAGCATGCCAAAATTGGTGGATGAGGGAAGCTTTGGATGAATTTTTTCGTCGACAAACGCAGACCCAAGAGAAAGAAGCACAAAATGTGCCTGTTTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

207

Amino Acids

23.69

Weight (kDa)

6.01

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 78 - 186 5.8e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 568
AciI CCGC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 264, 557
AfaI GTAC 2 cut(s) 425, 616
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 281, 374
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 402
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 364, 548
AluI AGCT 2 cut(s) 364, 548
Alw26I GTCTC 1 cut(s) 109
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 4 cut(s) 4, 339, 383, 464
ApeKI GCWGC 3 cut(s) 136, 153, 364
ApoI RAATTY 2 cut(s) 264, 557
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 410
BbsI GAAGAC 3 cut(s) 133, 201, 479
BbvI GCAGC 3 cut(s) 140, 148, 351
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 4 cut(s) 137, 154, 315, 365
BlsI GCNGC 4 cut(s) 138, 155, 316, 366
Bme1390I CCNGG 2 cut(s) 118, 404
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 118, 404
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 3 cut(s) 133, 201, 479
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 108, 403
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 374
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 108, 403
BseGI GGATG 4 cut(s) 176, 501, 543, 559
BseLI CCNNNNNNNGG 2 cut(s) 281, 374
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 37, 350
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 3 cut(s) 140, 148, 351
BshFI GGCC 4 cut(s) 6, 341, 385, 466
BsiSI CCGG 2 cut(s) 118, 342
BslI CCNNNNNNNGG 2 cut(s) 281, 374
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 4 cut(s) 6, 341, 385, 466
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 614
BspACI CCGC 1 cut(s) 314
BspANI GGCC 4 cut(s) 6, 341, 385, 466
BspCNI CTCAG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 614
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 108, 403
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 478
BstAUI TGTACA 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 319, 523
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 176, 501, 543, 559
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 2 cut(s) 430, 525
BstSCI CCNGG 2 cut(s) 116, 402
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 140, 148, 351
BstV2I GAAGAC 3 cut(s) 133, 201, 479
BstXI CCANNNNNNTGG 2 cut(s) 71, 91
BsuRI GGCC 4 cut(s) 6, 341, 385, 466
BtsCI GGATG 4 cut(s) 176, 501, 543, 559
Cac8I GCNNGC 2 cut(s) 319, 523
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 424, 615
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 6 cut(s) 85, 100, 416, 427, 522, 618
CviJI RGCY 9 cut(s) 6, 153, 317, 341, 364, 385, 402, 466, 548
CviKI_1 RGCY 9 cut(s) 6, 153, 317, 341, 364, 385, 402, 466, 548
CviQI GTAC 2 cut(s) 424, 615
DdeI CTNAG 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 6 cut(s) 88, 103, 419, 430, 525, 621
FatI CATG 6 cut(s) 84, 99, 415, 426, 521, 617
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 4 cut(s) 137, 154, 315, 365
FokI GGATG 4 cut(s) 183, 508, 550, 566
Fsp4HI GCNGC 4 cut(s) 137, 154, 315, 365
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 137, 154, 315, 365
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 4 cut(s) 6, 341, 385, 466
HapII CCGG 2 cut(s) 118, 342
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 141
Hin1II CATG 6 cut(s) 88, 103, 419, 430, 525, 621
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 445, 569
HindII GTYRAC 2 cut(s) 445, 569
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 3 cut(s) 206, 299, 458
HpaII CCGG 2 cut(s) 118, 342
Hpy166II GTNNAC 3 cut(s) 248, 445, 569
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 3 cut(s) 18, 359, 416
Hpy8I GTNNAC 3 cut(s) 248, 445, 569
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 88, 136, 174, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 6 cut(s) 88, 103, 419, 430, 525, 621
HspAI GCGC 1 cut(s) 139
LpnPI CCDG 8 cut(s) 31, 77, 131, 336, 355, 389, 416, 480
Lsp1109I GCAGC 3 cut(s) 140, 148, 351
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 35, 346
MboII GAAGA 4 cut(s) 138, 201, 320, 484
MfeI CAATTG 2 cut(s) 89, 303
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 89, 264, 303, 529, 557
MlyI GAGTC 3 cut(s) 215, 308, 467
MnlI CCTC 8 cut(s) 17, 58, 214, 275, 328, 331, 412, 534
Mph1103I ATGCAT 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 561
MspI CCGG 2 cut(s) 118, 342
MspR9I CCNGG 2 cut(s) 118, 404
MunI CAATTG 2 cut(s) 89, 303
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 518
NciI CCSGG 1 cut(s) 118
NlaIII CATG 6 cut(s) 88, 103, 419, 430, 525, 621
NmuCI GTSAC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 2 cut(s) 430, 525
PaeI GCATGC 1 cut(s) 525
PagI TCATGA 1 cut(s) 415
PciI ACATGT 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 561
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 138, 155, 316, 366
PleI GAGTC 3 cut(s) 214, 307, 466
PpsI GAGTC 3 cut(s) 214, 307, 466
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 425, 616
RsaNI GTAC 2 cut(s) 424, 615
SalI GTCGAC 1 cut(s) 567
SatI GCNGC 4 cut(s) 137, 154, 315, 365
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 3 cut(s) 215, 308, 467
ScrFI CCNGG 2 cut(s) 118, 404
SduI GDGCHC 1 cut(s) 410
SetI ASST 3 cut(s) 286, 366, 550
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 525
Sse9I AATT 5 cut(s) 89, 264, 303, 529, 557
SsiI CCGC 1 cut(s) 314
SspI AATATT 2 cut(s) 25, 372
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 116, 402
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 1 cut(s) 568
TasI AATT 5 cut(s) 89, 264, 303, 529, 557
TatI WGTACW 1 cut(s) 614
TauI GCSGC 1 cut(s) 317
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 136, 153, 364
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 404, 570
XapI RAATTY 2 cut(s) 264, 557
XceI RCATGY 2 cut(s) 430, 525
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 282
XmiI GTMKAC 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.