Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000425.1

Orthogroup ID

OG0011991

Physical Location & Seq

Genomic Coordinates Forward (+)

27243 .. 30483

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000425.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgggcatctatctatccagaaatatagcaaatttcattttctcctctcccctcttctccaagaaaaatggtggtattcccattcccatgcagttggagaacatggtctccttggtttcccggaccggaaggcatttgcagcgctacgataaaggctgccgccaagttgtaggatgcataccctatagatataggcaaacaaaacaggaatctttatctacggaggaaatagaagttcttgtgattagctcacaaaatggtaaaggaatgttgttcccaaagggaggttgggaacttgatgagtccattgaagaagcggcttacagagaaacgctagaggaggctggtgtgactggccatcttgagcctaaattgggcaaatggcgttacaagagcaaaagccagggcacttttcatgaggggtacatgttccctttgcttgtcaacaagcagttcgagtcttggcctgagaagactgtcaggaaacgagaatgggtgactcttgctgaagctaaagaagcatgccaaaattggtggatgaaggaagctttggatgaatttgctcggcgacaaacgcagcaccaaaagaaagaagaacaagatgagcctgagccccaatccattctagcaaatcatagaaagcccaacaaagattgtgggtcgcagtccaaaaccaaactccacccggatcccagatccgtctccatttcccaaacccacctagatcctgatcctgatgccaatgatctggacagcagcgccgtcagacacttccctatgacctgcaatggaggagactgccaaactgctatggccatcgccgaccaacaaatcgccgccgatgaagtcccaacgagccaacaccacctctcggccatgccaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

295

Amino Acids

33.54

Weight (kDa)

6.38

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18300 AT1G73540
fragaria_vesca	FvH4_5g17620 FvH4_5g17620
malus_domestica	MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica	Prupe.5G235900_v2.0.a1
pyrus_communis	pycom06g20590 pycom14g19970
rosa_chinensis	RchiOBHm_Chr7g0178041
rosa_laevigata	RLG00000005479
rosa_multiflora	Rmu_sc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275250
rosa_rugosa	Rorug06G0412500 Rorug06G0412500
rosa_samantha	Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana	Rw7G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AciI	CCGC	3 cut(s)	160, 317, 837
AclWI	GGATC	5 cut(s)	683, 690, 696, 719, 725
AcoI	YGGCCR	3 cut(s)	355, 813, 873
AcsI	RAATTY	2 cut(s)	31, 557
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	425
AfeI	AGCGCT	1 cut(s)	143
AfiI	CCNNNNNNNGG	3 cut(s)	284, 374, 871
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	249, 512, 548
AluI	AGCT	3 cut(s)	249, 512, 548
Alw26I	GTCTC	3 cut(s)	112, 706, 789
AlwI	GGATC	5 cut(s)	683, 690, 696, 719, 725
Aor51HI	AGCGCT	1 cut(s)	143
AoxI	GGCC	4 cut(s)	355, 464, 813, 873
ApeKI	GCWGC	4 cut(s)	139, 156, 577, 756
ApoI	RAATTY	2 cut(s)	31, 557
AspLEI	GCGC	2 cut(s)	144, 761
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	2 cut(s)	121, 686
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	410
BalI	TGGCCA	2 cut(s)	357, 815
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	143, 151, 589, 768
BccI	CCATC	2 cut(s)	366, 824
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	2 cut(s)	121, 686
BcoDI	GTCTC	3 cut(s)	112, 706, 789
BfaI	CTAG	3 cut(s)	335, 626, 722
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	2 cut(s)	145, 762
BfuAI	ACCTGC	1 cut(s)	791
BisI	GCNGC	7 cut(s)	140, 157, 160, 318, 578, 757, 837
BlsI	GCNGC	7 cut(s)	141, 158, 161, 319, 579, 758, 838
Bme1390I	CCNGG	3 cut(s)	121, 404, 686
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	3 cut(s)	121, 404, 686
BmsI	GCATC	3 cut(s)	15, 164, 727
BpiI	GAAGAC	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	121, 686
BsaBI	GATNNNNATC	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	111, 403
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 374, 871
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	111, 403
BseGI	GGATG	3 cut(s)	179, 543, 559
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	3 cut(s)	284, 374, 871
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	459, 600
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	3 cut(s)	34, 353, 807
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	143, 151, 589, 768
BshFI	GGCC	4 cut(s)	357, 466, 815, 875
BsiSI	CCGG	3 cut(s)	121, 126, 686
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	3 cut(s)	284, 374, 871
BsmAI	GTCTC	3 cut(s)	112, 706, 789
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	833
BsnI	GGCC	4 cut(s)	357, 466, 815, 875
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	410, 615
Bsp143I	GATC	5 cut(s)	688, 695, 724, 730, 745
BspACI	CCGC	3 cut(s)	160, 317, 837
BspANI	GGCC	4 cut(s)	357, 466, 815, 875
BspCNI	CTCAG	2 cut(s)	460, 601
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	5 cut(s)	683, 690, 696, 719, 725
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	111, 403
BssMI	GATC	5 cut(s)	688, 695, 724, 730, 745
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	468, 609
BstF5I	GGATG	3 cut(s)	179, 543, 559
BstH2I	RGCGCY	2 cut(s)	145, 762
BstHHI	GCGC	2 cut(s)	144, 761
BstKTI	GATC	5 cut(s)	691, 698, 727, 733, 748
BstMAI	GTCTC	3 cut(s)	112, 706, 789
BstMBI	GATC	5 cut(s)	688, 695, 724, 730, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 518, 574
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	430, 525
BstSCI	CCNGG	3 cut(s)	119, 402, 684
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	143, 151, 589, 768
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	688, 695, 724
BstXI	CCANNNNNNTGG	2 cut(s)	94, 748
BstYI	RGATCY	3 cut(s)	688, 695, 724
BsuRI	GGCC	4 cut(s)	357, 466, 815, 875
BtgZI	GCGATG	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	179, 543, 559
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	2 cut(s)	144, 761
Cfr13I	GGNCC	1 cut(s)	123
CpoI	CGGWCCG	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	4 cut(s)	515, 550, 637, 672
CspI	CGGWCCG	1 cut(s)	123
CviAII	CATG	6 cut(s)	88, 103, 416, 427, 522, 877
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	468, 609
DpnI	GATC	5 cut(s)	690, 697, 726, 732, 747
DpnII	GATC	5 cut(s)	688, 695, 724, 730, 745
EaeI	YGGCCR	3 cut(s)	355, 813, 873
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	123
Eco47III	AGCGCT	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	6 cut(s)	91, 106, 419, 430, 525, 880
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	6 cut(s)	87, 102, 415, 426, 521, 876
Fnu4HI	GCNGC	7 cut(s)	140, 157, 160, 318, 578, 757, 837
FokI	GGATG	3 cut(s)	186, 550, 566
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	7 cut(s)	140, 157, 160, 318, 578, 757, 837
FspBI	CTAG	3 cut(s)	335, 626, 722
GlaI	GCGC	2 cut(s)	143, 760
GluI	GCNGC	7 cut(s)	140, 157, 160, 318, 578, 757, 837
HaeII	RGCGCY	2 cut(s)	145, 762
HaeIII	GGCC	4 cut(s)	357, 466, 815, 875
HapII	CCGG	3 cut(s)	121, 126, 686
HhaI	GCGC	2 cut(s)	144, 761
Hin1II	CATG	6 cut(s)	91, 106, 419, 430, 525, 880
Hin6I	GCGC	2 cut(s)	142, 759
HinP1I	GCGC	2 cut(s)	142, 759
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	4 cut(s)	209, 302, 458, 499
HpaII	CCGG	3 cut(s)	121, 126, 686
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	767
Hpy188III	TCNNGA	7 cut(s)	18, 362, 416, 481, 728, 734, 749
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	123, 535
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	4 cut(s)	91, 139, 177, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 518, 574
HpyF3I	CTNAG	2 cut(s)	468, 609
Hsp92II	CATG	6 cut(s)	91, 106, 419, 430, 525, 880
HspAI	GCGC	2 cut(s)	142, 759
Kzo9I	GATC	5 cut(s)	688, 695, 724, 730, 745
Lsp1109I	GCAGC	4 cut(s)	143, 151, 589, 768
LweI	GCATC	3 cut(s)	15, 164, 727
MaeI	CTAG	3 cut(s)	335, 626, 722
MaeIII	GTNAC	3 cut(s)	349, 386, 496
MalI	GATC	5 cut(s)	690, 697, 726, 732, 747
MboI	GATC	5 cut(s)	688, 695, 724, 730, 745
MboII	GAAGA	4 cut(s)	46, 323, 484, 605
MflI	RGATCY	3 cut(s)	688, 695, 724
MhlI	GDGCHC	2 cut(s)	410, 615
MlsI	TGGCCA	2 cut(s)	357, 815
MluCI	AATT	4 cut(s)	31, 371, 529, 557
MluNI	TGGCCA	2 cut(s)	357, 815
MlyI	GAGTC	3 cut(s)	311, 467, 493
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	9 cut(s)	55, 62, 217, 278, 331, 334, 412, 785, 878
Mox20I	TGGCCA	2 cut(s)	357, 815
Mph1103I	ATGCAT	1 cut(s)	179
MscI	TGGCCA	2 cut(s)	357, 815
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	357, 815
MspI	CCGG	3 cut(s)	121, 126, 686
MspR9I	CCNGG	3 cut(s)	121, 404, 686
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	139, 518, 574
NciI	CCSGG	2 cut(s)	121, 686
NdeII	GATC	5 cut(s)	688, 695, 724, 730, 745
NlaIII	CATG	6 cut(s)	91, 106, 419, 430, 525, 880
NlaIV	GGNNCC	1 cut(s)	690
NmeAIII	GCCGAG	2 cut(s)	544, 851
NmuCI	GTSAC	2 cut(s)	349, 496
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	2 cut(s)	430, 525
PaeI	GCATGC	1 cut(s)	525
PagI	TCATGA	1 cut(s)	415
PciI	ACATGT	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	7 cut(s)	141, 158, 161, 319, 579, 758, 838
PleI	GAGTC	3 cut(s)	310, 466, 493
PpsI	GAGTC	3 cut(s)	310, 466, 493
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	3 cut(s)	688, 695, 724
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	86
Rsr2I	CGGWCCG	1 cut(s)	123
RsrII	CGGWCCG	1 cut(s)	123
SatI	GCNGC	7 cut(s)	140, 157, 160, 318, 578, 757, 837
Sau3AI	GATC	5 cut(s)	688, 695, 724, 730, 745
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	3 cut(s)	311, 467, 493
ScrFI	CCNGG	3 cut(s)	121, 404, 686
SduI	GDGCHC	2 cut(s)	410, 615
SetI	ASST	7 cut(s)	251, 289, 514, 550, 723, 785, 870
SfaNI	GCATC	3 cut(s)	15, 164, 727
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	4 cut(s)	31, 371, 529, 557
SsiI	CCGC	3 cut(s)	160, 317, 837
SspMI	CTAG	3 cut(s)	335, 626, 722
StyD4I	CCNGG	3 cut(s)	119, 402, 684
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	31, 371, 529, 557
TauI	GCSGC	3 cut(s)	162, 320, 839
TfiI	GAWTC	1 cut(s)	209
TseFI	GTSAC	2 cut(s)	349, 496
TseI	GCWGC	4 cut(s)	139, 156, 577, 756
Tsp45I	GTSAC	2 cut(s)	349, 496
TspDTI	ATGAA	5 cut(s)	25, 404, 554, 570, 858
TspGWI	ACGGA	2 cut(s)	236, 688
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	31, 557
XceI	RCATGY	2 cut(s)	430, 525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XspI	CTAG	3 cut(s)	335, 626, 722
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.