RchiOBHm_Chr7g0178041

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011991
Physical Location & Seq
Forward (+)
856862 .. 859032
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15865

Sequence Viewer

Length: 621 bp
ATGGGCATCTATCTATCCAGAAATATAGCAAGTTTCATTTTCTCCTCTCCCCTCTTCTCCAAGAAAAATGGTGGTATTCCCATTCCCATGCAGTTGGAGAACATGGTCTCCTTGGTTTCCCGGACTGGAAGGCATTTGCAGCGCTACGATAAAGGCTGCCGCCAAGTTGTAGGATGCATACCCTACAGATATAGGCAAACAAAACAGGAATCTTTATCTACGGAGGAAATAGAAGTTCTTGTGATTAGTTCACAAAAGGGTAAAGGAATGTTGTTCCCAAAGGGAGGTTGGGAACTTGATGAGTCCATTGAAGAAGCGGCTTACCGAGAAACGCTAGAGGAGGCTGGTGTGACTGGCCATCTTGAGCCTAAATTGGGCAAATGGCGTTACAAGAGCAAAAGCCAGGGCACTTTTCATGAGGGGTACATGTTCCCTTTGCTTGTCAACAAGCAGTTCGAGTCTTGGCCTGAGAAGACTGTCAGGAAACGAGAATGGATGACTCTTGCTGAAGCTAAAGAAGCATGCCAAAATTGGTGGATGAAGGAAGCTTTGGATGAATTTGCTCGTCGAAAAACGCAGCACCAAAAGAAAGAAGAACAAGATGAGCCTGTTTGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

206

Amino Acids

23.97

Weight (kDa)

8.79

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 78 - 186 7.3e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18300 AT1G73540
fragaria_vesca FvH4_5g17620 FvH4_5g17620
malus_domestica MD06G1232000.v1.1 MD14G1238600.v1.1
prunus_persica Prupe.5G235900_v2.0.a1
pyrus_communis pycom06g20590 pycom14g19970
rosa_chinensis RchiOBHm_Chr7g0178041
rosa_laevigata RLG00000005479
rosa_multiflora Rmu_sc0000425.1_g000002
rosa_roxburghii Rroxscaffold_3G00275250
rosa_rugosa Rorug06G0412500 Rorug06G0412500
rosa_samantha Rh7AG012100 Rh7CG012100 Rh7DG012400
rosa_wichuraiana Rw7G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 317
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 2 cut(s) 425, 616
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 284, 374
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 512, 548
AluI AGCT 2 cut(s) 512, 548
Alw26I GTCTC 1 cut(s) 112
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 355, 464
ApeKI GCWGC 3 cut(s) 139, 156, 577
ApoI RAATTY 1 cut(s) 557
AspLEI GCGC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 410
BalI TGGCCA 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 479
BbvI GCAGC 3 cut(s) 143, 151, 589
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 184
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 5 cut(s) 140, 157, 160, 318, 578
BlsI GCNGC 5 cut(s) 141, 158, 161, 319, 579
Bme1390I CCNGG 2 cut(s) 121, 404
BmrFI CCNGG 2 cut(s) 121, 404
BmsI GCATC 2 cut(s) 15, 164
BpiI GAAGAC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 111, 403
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 374
Bse1I ACTGG 2 cut(s) 130, 358
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 111, 403
BseGI GGATG 4 cut(s) 179, 501, 543, 559
BseLI CCNNNNNNNGG 2 cut(s) 284, 374
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 130, 358
BseRI GAGGAG 2 cut(s) 34, 353
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 3 cut(s) 143, 151, 589
BshFI GGCC 2 cut(s) 357, 466
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 284, 374
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 2 cut(s) 357, 466
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 614
BspACI CCGC 2 cut(s) 160, 317
BspANI GGCC 2 cut(s) 357, 466
BspCNI CTCAG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 112
BsrGI TGTACA 1 cut(s) 614
BsrI ACTGG 2 cut(s) 130, 358
BssECI CCNNGG 2 cut(s) 111, 403
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 179, 501, 543, 559
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 139, 518
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 2 cut(s) 430, 525
BstSCI CCNGG 2 cut(s) 119, 402
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 143, 151, 589
BstV2I GAAGAC 1 cut(s) 479
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 2 cut(s) 357, 466
BtsCI GGATG 4 cut(s) 179, 501, 543, 559
Cac8I GCNNGC 1 cut(s) 523
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 424, 615
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 5 cut(s) 88, 103, 416, 427, 522
CviQI GTAC 2 cut(s) 424, 615
DdeI CTNAG 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 5 cut(s) 91, 106, 419, 430, 525
FaiI YATR 9 cut(s) 26, 89, 104, 179, 192, 417, 428, 523, 619
FatI CATG 5 cut(s) 87, 102, 415, 426, 521
Fnu4HI GCNGC 5 cut(s) 140, 157, 160, 318, 578
FokI GGATG 4 cut(s) 186, 508, 550, 566
Fsp4HI GCNGC 5 cut(s) 140, 157, 160, 318, 578
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 143
GluI GCNGC 5 cut(s) 140, 157, 160, 318, 578
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 2 cut(s) 357, 466
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 144
Hin1II CATG 5 cut(s) 91, 106, 419, 430, 525
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 4 cut(s) 209, 302, 458, 499
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 251, 445
Hpy188III TCNNGA 4 cut(s) 18, 362, 416, 481
Hpy8I GTNNAC 2 cut(s) 251, 445
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 2 cut(s) 123, 535
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 3 cut(s) 91, 139, 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 518
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 5 cut(s) 91, 106, 419, 430, 525
HspAI GCGC 1 cut(s) 142
Lsp1109I GCAGC 3 cut(s) 143, 151, 589
LweI GCATC 2 cut(s) 15, 164
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 349, 386
MboII GAAGA 4 cut(s) 46, 323, 484, 605
MhlI GDGCHC 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 3 cut(s) 371, 529, 557
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 3 cut(s) 311, 467, 493
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 55, 62, 217, 278, 331, 334, 412
Mox20I TGGCCA 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 179
MscI TGGCCA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 2 cut(s) 121, 404
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 139, 518
NciI CCSGG 1 cut(s) 121
NlaIII CATG 5 cut(s) 91, 106, 419, 430, 525
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 2 cut(s) 430, 525
PaeI GCATGC 1 cut(s) 525
PagI TCATGA 1 cut(s) 415
PciI ACATGT 1 cut(s) 426
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 5 cut(s) 141, 158, 161, 319, 579
PleI GAGTC 3 cut(s) 310, 466, 493
PpsI GAGTC 3 cut(s) 310, 466, 493
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
RsaI GTAC 2 cut(s) 425, 616
RsaNI GTAC 2 cut(s) 424, 615
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 5 cut(s) 140, 157, 160, 318, 578
SchI GAGTC 3 cut(s) 311, 467, 493
ScrFI CCNGG 2 cut(s) 121, 404
SduI GDGCHC 1 cut(s) 410
SetI ASST 3 cut(s) 289, 514, 550
SfaNI GCATC 2 cut(s) 15, 164
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 525
Sse9I AATT 3 cut(s) 371, 529, 557
SsiI CCGC 2 cut(s) 160, 317
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 119, 402
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 456, 568
TasI AATT 3 cut(s) 371, 529, 557
TatI WGTACW 1 cut(s) 614
TauI GCSGC 2 cut(s) 162, 320
TfiI GAWTC 1 cut(s) 209
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 3 cut(s) 139, 156, 577
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 25, 404, 554, 570
TspGWI ACGGA 1 cut(s) 236
XapI RAATTY 1 cut(s) 557
XceI RCATGY 2 cut(s) 430, 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XspI CTAG 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.