Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Forward (+)

6331398 .. 6333856

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCTTCCATAACTCAAGCTGCAGATCTAAACAACAACAACAGTAACCTTCATTTTCAAACATTTCATCCTTCCTCTACTTCTCTCGAATCGCTCTTCCTTCATCATCATCAACAACAATTACTTCACTTTCCCGGAAACTCTCCAGACAGTAGTAACAATTTCTCTTCAACTTCAAGTTTCCTCCATAGTGATCACAACATCGTCGATGAGACCAAGAAGAGAAAAGCTTTGTTACCTACTTTGTCTTCATCAGAGACTAGCGGCGTCTCCGATAATACGAATGTTATTGCCACTGAAACAGGTTCTTTGAGAAGAGGTAAGAGGTTGAAGAAGAAGAAGGAAGAAGAAGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAATAAACGAGAGATTAAGATGCTTGCAAGATATGGTGCCCGGATGTTATAAGGCTATGGGAATGGCTACGATGCTTGACGAGATAATTAATTATGTCCAGTCTCTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGCAAGTTCGTTTTATGACTTTAACTCAGAGACAGATGCAGTTGATTCCATGCAGAGAGCAAAGGCACGTGAGACAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTTATCAACATGGTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

260

Amino Acids

29.36

Weight (kDa)

6.41

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	160 - 204	5.2e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	532
AciI	CCGC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	7
AcvI	CACGTG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	113, 225, 231, 385
AluBI	AGCT	3 cut(s)	74, 284, 471
AluI	AGCT	3 cut(s)	74, 284, 471
Alw26I	GTCTC	7 cut(s)	260, 305, 328, 603, 665, 707, 724
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	74, 641
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	2 cut(s)	426, 483
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	2 cut(s)	189, 537
AvaII	GGWCC	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	532
BbrPI	CACGTG	1 cut(s)	710
BbsI	GAAGAC	3 cut(s)	294, 411, 748
BbvI	GCAGC	2 cut(s)	61, 653
BccI	CCATC	2 cut(s)	718, 737
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	189, 537
BcoDI	GTCTC	7 cut(s)	260, 305, 328, 603, 665, 707, 724
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	3 cut(s)	75, 602, 639
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	3 cut(s)	75, 319, 642
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	3 cut(s)	76, 320, 643
Bme1390I	CCNGG	2 cut(s)	189, 537
Bme18I	GGWCC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	2 cut(s)	534, 776
BmrFI	CCNGG	2 cut(s)	189, 537
BmsI	GCATC	3 cut(s)	506, 558, 667
BpiI	GAAGAC	3 cut(s)	294, 411, 748
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	189, 537
BsaAI	YACGTR	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	121, 545
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	61, 653
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	189, 537
BslFI	GGGAC	1 cut(s)	760
BsmAI	GTCTC	7 cut(s)	260, 305, 328, 603, 665, 707, 724
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	79, 247
Bsp1720I	GCTNAGC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	680
BspLI	GGNNCC	2 cut(s)	534, 776
BspMAI	CTGCAG	2 cut(s)	79, 643
BspQI	GCTCTTC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	79, 247
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	98, 206, 718
Bst6I	CTCTTC	5 cut(s)	155, 226, 269, 364, 439
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	472, 667
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	121, 545
BstKTI	GATC	2 cut(s)	82, 250
BstMAI	GTCTC	7 cut(s)	260, 305, 328, 603, 665, 707, 724
BstMBI	GATC	2 cut(s)	79, 247
BstSCI	CCNGG	2 cut(s)	187, 535
BstSFI	CTRYAG	3 cut(s)	75, 602, 639
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	61, 653
BstV2I	GAAGAC	3 cut(s)	294, 411, 748
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	121, 545
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	4 cut(s)	348, 456, 636, 723
Cac8I	GCNNGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	1 cut(s)	310
CviAII	CATG	4 cut(s)	46, 431, 691, 771
DdeI	CTNAG	2 cut(s)	472, 667
DpnI	GATC	2 cut(s)	81, 249
DpnII	GATC	2 cut(s)	79, 247
Eam1104I	CTCTTC	5 cut(s)	155, 226, 269, 364, 439
EarI	CTCTTC	5 cut(s)	155, 226, 269, 364, 439
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	774
Eco72I	CACGTG	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	4 cut(s)	49, 434, 694, 774
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	4 cut(s)	45, 430, 690, 770
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	75, 319, 642
FokI	GGATG	2 cut(s)	108, 552
Fsp4HI	GCNGC	3 cut(s)	75, 319, 642
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	75, 319, 642
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	189, 537
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	49, 434, 694, 774
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	5 cut(s)	16, 143, 607, 686, 748
HpaII	CCGG	2 cut(s)	189, 537
Hpy188I	TCNGA	5 cut(s)	28, 36, 310, 328, 670
Hpy188III	TCNNGA	4 cut(s)	13, 140, 200, 625
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	113, 135, 164, 388
HpyCH4III	ACNGT	3 cut(s)	98, 206, 718
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	5 cut(s)	77, 523, 641, 680, 694
HpyF3I	CTNAG	2 cut(s)	472, 667
HpySE526I	ACGT	1 cut(s)	709
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	49, 434, 694, 774
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	79, 247
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	202, 213, 342, 454, 550, 608, 765
Lsp1109I	GCAGC	2 cut(s)	61, 653
LweI	GCATC	3 cut(s)	506, 558, 667
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	3 cut(s)	98, 209, 288
MalI	GATC	2 cut(s)	81, 249
MboI	GATC	2 cut(s)	79, 247
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	5 cut(s)	7, 173, 214, 582, 586
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	7 cut(s)	139, 248, 365, 372, 440, 485, 632
MroXI	GAANNNNTTC	2 cut(s)	426, 483
MseI	TTAA	3 cut(s)	512, 585, 663
MspI	CCGG	2 cut(s)	189, 537
MspR9I	CCNGG	2 cut(s)	189, 537
NciI	CCSGG	2 cut(s)	189, 537
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	79, 247
NlaIII	CATG	4 cut(s)	49, 434, 694, 774
NlaIV	GGNNCC	2 cut(s)	534, 776
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PdmI	GAANNNNTTC	2 cut(s)	426, 483
PfeI	GAWTC	4 cut(s)	16, 143, 607, 686
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	76, 320, 643
PleI	GAGTC	1 cut(s)	756
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	756
Ppu21I	YACGTR	1 cut(s)	710
PshBI	ATTAAT	1 cut(s)	585
PsiI	TTATAA	1 cut(s)	546
PspCI	CACGTG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	534, 776
PspPI	GGNCC	1 cut(s)	774
PstI	CTGCAG	2 cut(s)	79, 643
PsuI	RGATCY	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	512, 585, 663
SatI	GCNGC	3 cut(s)	75, 319, 642
Sau3AI	GATC	2 cut(s)	79, 247
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	2 cut(s)	189, 537
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	9 cut(s)	76, 105, 286, 295, 361, 376, 383, 473, 712
SfaNI	GCATC	3 cut(s)	506, 558, 667
SfcI	CTRYAG	3 cut(s)	75, 602, 639
SinI	GGWCC	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	5 cut(s)	7, 173, 214, 582, 586
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	187, 535
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	98, 206, 718
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	5 cut(s)	12, 141, 261, 615, 626
TasI	AATT	5 cut(s)	7, 173, 214, 582, 586
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	4 cut(s)	16, 143, 607, 686
Tru1I	TTAA	3 cut(s)	512, 585, 663
Tru9I	TTAA	3 cut(s)	512, 585, 663
TscAI	CASTG	4 cut(s)	355, 463, 643, 723
TseI	GCWGC	2 cut(s)	74, 641
TspDTI	ATGAA	6 cut(s)	95, 110, 146, 294, 419, 644
TspRI	CASTG	4 cut(s)	355, 463, 643, 723
VpaK11BI	GGWCC	1 cut(s)	774
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	2 cut(s)	426, 483
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.