Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Reverse (-)

22784644 .. 22785958

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19340.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCTGAATTCACAGAAGATTTCCTAAGCAATAAACCTTCACTTCCATTTTTAGATATTGACCAAAACATGGAACCAACAAACCAGTATGCAGACGAGTTCAATATTCCAAGTGTCGTGGAATATCCAAGCTTGAATTTCCACACCTACATGCCCTTCTCAAATGACACTTACTTGTTCAGCAATCAAGAACCCGAGTTCCCCGCCGGAAACATGATCGAAAACTTTCCAAAATTACAAGTTCATTCCATTGTTACAGATGGAAATGAAAGCAAGAAGAGAATAGCAGTGGATGATGCAACAGAGAGCAGCTCCGGAATCTCTACTACCCCAGTTTCTGAAACCGGGGTCAAGCGAAAAAATAGCGCAGAAAGAGGAAAGAGGGTCAAGAGCAATGAGAAGGAAGATGAGAAACCAAAGGAATTTGTTCATGTTAGAGCCAGGAGAGGCCAAGCAACTCACAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAGGCTGACATGTTTGCAAGATATTGTCCCAGGGTGCTCTAAGACGATGGGAATGGCGGTAATGTTGGACGAGATAATTAATTATGTTCAGTCCTTACAAAACCAGATTGAGTTCCTATCTATGAAGCTAGCCACAGCAAGCTCTTTCTATGACTCCAACTCAGAGACTGATGTTACGGAAACAATGCAGATAGCAGGAGAGTTGGAGAGATTGAAGAGAGAAGCTGCAGGATATGGAGGATTTGGTGCTAGCTTCCACTCAACATCTTCAGCTTGGTCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

264

Amino Acids

29.47

Weight (kDa)

5.18

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	2 cut(s)	204, 563
AcsI	RAATTY	3 cut(s)	8, 136, 422
AcuI	CTGAAG	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	103, 136, 721
AjnI	CCWGG	2 cut(s)	440, 535
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	7 cut(s)	132, 312, 634, 648, 731, 759, 779
AluI	AGCT	7 cut(s)	132, 312, 634, 648, 731, 759, 779
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	665
AlwNI	CAGNNNCTG	2 cut(s)	338, 674
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	309, 731
ApoI	RAATTY	3 cut(s)	8, 136, 422
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	2 cut(s)	225, 426
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	346
AsuNHI	GCTAGC	2 cut(s)	634, 755
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	321, 718
BccI	CCATC	2 cut(s)	254, 547
BciT130I	CCWGG	2 cut(s)	442, 537
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	3 cut(s)	473, 635, 756
BfmI	CTRYAG	1 cut(s)	732
BisI	GCNGC	2 cut(s)	310, 732
BlsI	GCNGC	2 cut(s)	311, 733
Bme1390I	CCNGG	3 cut(s)	346, 442, 537
Bme18I	GGWCC	1 cut(s)	783
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	2 cut(s)	75, 785
BmrFI	CCNGG	3 cut(s)	346, 442, 537
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	286
BmtI	GCTAGC	2 cut(s)	638, 759
BmuI	ACTGGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	345, 535, 536
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	85, 332
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	442, 537
BseDI	CCNNGG	3 cut(s)	345, 535, 536
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	2 cut(s)	85, 332
BseXI	GCAGC	2 cut(s)	321, 718
BshFI	GGCC	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	207, 315, 345
BslFI	GGGAC	2 cut(s)	518, 769
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	518, 769
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp13I	TCCGGA	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	204, 563
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	680
BspEI	TCCGGA	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	75, 785
BspMAI	CTGCAG	1 cut(s)	736
BspOI	GCTAGC	2 cut(s)	638, 759
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	85, 332
BssECI	CCNNGG	3 cut(s)	345, 535, 536
BssMI	GATC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	442, 537
Bst4CI	ACNGT	2 cut(s)	464, 470
Bst6I	CTCTTC	3 cut(s)	272, 484, 716
BstC8I	GCNNGC	3 cut(s)	636, 646, 757
BstDEI	CTNAG	3 cut(s)	26, 546, 667
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	442, 537
BstNSI	RCATGY	2 cut(s)	154, 519
BstSCI	CCNGG	3 cut(s)	344, 440, 535
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	2 cut(s)	321, 718
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	636, 646, 757
CaiI	CAGNNNCTG	2 cut(s)	338, 674
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	783
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	5 cut(s)	70, 151, 214, 431, 516
DdeI	CTNAG	3 cut(s)	26, 546, 667
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	272, 484, 716
EarI	CTCTTC	3 cut(s)	272, 484, 716
Eco47I	GGWCC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	440, 535
FaeI	CATG	5 cut(s)	73, 154, 217, 434, 519
FaqI	GGGAC	2 cut(s)	518, 769
FatI	CATG	5 cut(s)	69, 150, 213, 430, 515
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	310, 732
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	310, 732
FspBI	CTAG	3 cut(s)	473, 635, 756
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	310, 732
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	3 cut(s)	207, 315, 345
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	5 cut(s)	73, 154, 217, 434, 519
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	2 cut(s)	318, 659
HpaII	CCGG	3 cut(s)	207, 315, 345
Hpy188I	TCNGA	3 cut(s)	7, 340, 670
Hpy188III	TCNNGA	3 cut(s)	188, 315, 388
HpyAV	CCTTC	3 cut(s)	48, 166, 394
HpyCH4III	ACNGT	2 cut(s)	464, 470
HpyCH4V	TGCA	5 cut(s)	92, 299, 523, 694, 734
HpyF3I	CTNAG	3 cut(s)	26, 546, 667
Hsp92II	CATG	5 cut(s)	73, 154, 217, 434, 519
HspAI	GCGC	1 cut(s)	366
Kpn2I	TCCGGA	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	2 cut(s)	321, 718
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	473, 635, 756
MaeIII	GTNAC	3 cut(s)	253, 464, 679
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	6 cut(s)	29, 289, 416, 501, 733, 765
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	6 cut(s)	8, 136, 233, 422, 582, 586
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	3 cut(s)	552, 687, 690
MnlI	CCTC	5 cut(s)	368, 375, 440, 485, 737
MroI	TCCGGA	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	225, 426
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	3 cut(s)	207, 315, 345
MspR9I	CCNGG	3 cut(s)	346, 442, 537
MvaI	CCWGG	2 cut(s)	442, 537
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	216
NheI	GCTAGC	2 cut(s)	634, 755
NlaIII	CATG	5 cut(s)	73, 154, 217, 434, 519
NlaIV	GGNNCC	2 cut(s)	75, 785
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	2 cut(s)	154, 519
PasI	CCCWGGG	1 cut(s)	536
PciI	ACATGT	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	225, 426
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	311, 733
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PscI	ACATGT	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	440, 535
PspGI	CCWGG	2 cut(s)	440, 535
PspN4I	GGNNCC	2 cut(s)	75, 785
PspPI	GGNCC	1 cut(s)	783
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	2 cut(s)	338, 674
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	310, 732
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	783
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	3 cut(s)	346, 442, 537
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	9 cut(s)	40, 134, 149, 314, 636, 650, 733, 761, 781
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	6 cut(s)	8, 136, 233, 422, 582, 586
SsiI	CCGC	2 cut(s)	204, 563
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	3 cut(s)	473, 635, 756
StyD4I	CCNGG	3 cut(s)	344, 440, 535
TaaI	ACNGT	2 cut(s)	464, 470
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	8, 136, 233, 422, 582, 586
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	309, 731
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	5 cut(s)	233, 282, 419, 519, 644
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	783
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	3 cut(s)	8, 136, 422
XceI	RCATGY	2 cut(s)	154, 519
XmnI	GAANNNNTTC	2 cut(s)	225, 426
XspI	CTAG	3 cut(s)	473, 635, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.