Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Reverse (-)

17274006 .. 17275566

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGAATTCACAGCAGATATGCAAAGCATTGCACCTTCACTTCCTTTCTTAGATATTGCCCCAAACACAAACATGGAACCAATAAACCAGTATACAGATCAATTTAACCCAACTGTCTTGGACTTTTATTCAAGCTTGAATTTCCAGACTTGTATGCCTTTCTCCAATGACAATTACTTCAGCTCTCAGGGACCTGAGTTCCAGGGAAACTTGGTTCAAAACTTTCCAAATTTTTTTGATCACGACAACAAGAGCAACCAGAATGATGAGGCTCCTGCTGTTCAGCACCTTGTAGGAGCTGGAGTTGGAAATGGATTCCAAGAAAGCAAGAAGAGAAGAGCAATGGATGATGTATCAGAGGGCAGCTCTGGAATCTCTACTCCCCCAGTTTCTGAAACTGGAGTTAAGAGGAAAAATAGCTCAGGAAGAGGAAAGAGACTCAAAAAAAGCAACGAGAAAGAAGATGAGAAACCAAAGGACGTGGTTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAGATCAATGAAAGACTCAGATGCTTGCAAAACATTGTCCCAGGATGCTCTAAGACAATGGGAATGGCGGTAATGTTGGACGAAATAATTAATTATGTCCAGTCCTTGCAGAACCAAGTCGAGTTCCTATCCATGAAGCTAACTGCAGCAAGCTCTTTCTACGACTTCAACTCGGAGACAGATGACATGGAAACAATGCAGAGTGCAAAGGTTTACGAGGCAGCAGAGTTGGAGAGAATGAAAAGAGAAGGATATGGAGGATATGGTAGCTTCCACTCAACTTGGCCCCTCAACACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

285

Amino Acids

31.83

Weight (kDa)

5.49

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	1 cut(s)	623
AcsI	RAATTY	3 cut(s)	8, 142, 232
AcuI	CTGAAG	1 cut(s)	166
AcvI	CACGTG	1 cut(s)	852
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	4 cut(s)	135, 142, 221, 724
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	204, 595
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	8 cut(s)	138, 186, 302, 369, 423, 694, 708, 825
AluI	AGCT	8 cut(s)	138, 186, 302, 369, 423, 694, 708, 825
Alw26I	GTCTC	2 cut(s)	433, 725
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	508, 839
ApeKI	GCWGC	3 cut(s)	366, 701, 776
ApoI	RAATTY	3 cut(s)	8, 142, 232
AseI	ATTAAT	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	194, 840
AvaII	GGWCC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	852
BbvI	GCAGC	3 cut(s)	378, 713, 788
BciT130I	CCWGG	2 cut(s)	206, 597
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	433, 725
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	3 cut(s)	367, 702, 777
BlsI	GCNGC	3 cut(s)	368, 703, 778
Bme1390I	CCNGG	2 cut(s)	206, 597
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	194, 840
BmiI	GGNNCC	4 cut(s)	81, 195, 276, 842
BmrFI	CCNGG	2 cut(s)	206, 597
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	566, 590
BmuI	ACTGGG	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	2 cut(s)	324, 423
Bpu10I	CCTNAGC	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	205, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bse1I	ACTGG	4 cut(s)	91, 389, 406, 655
Bse3DI	GCAATG	2 cut(s)	30, 351
BseBI	CCWGG	2 cut(s)	206, 597
BseDI	CCNNGG	2 cut(s)	205, 595
BseGI	GGATG	2 cut(s)	355, 605
BseMI	GCAATG	2 cut(s)	30, 351
BseMII	CTCAG	4 cut(s)	189, 203, 438, 586
BseNI	ACTGG	4 cut(s)	91, 389, 406, 655
BseXI	GCAGC	3 cut(s)	378, 713, 788
BshFI	GGCC	2 cut(s)	510, 841
BslFI	GGGAC	2 cut(s)	207, 578
BsmAI	GTCTC	2 cut(s)	433, 725
BsmFI	GGGAC	2 cut(s)	207, 578
BsnI	GGCC	2 cut(s)	510, 841
Bsp143I	GATC	3 cut(s)	100, 241, 558
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	2 cut(s)	510, 841
BspCNI	CTCAG	4 cut(s)	190, 202, 437, 585
BspLI	GGNNCC	4 cut(s)	81, 195, 276, 842
BspMAI	CTGCAG	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	30, 351
BsrI	ACTGG	4 cut(s)	91, 389, 406, 655
BssECI	CCNNGG	2 cut(s)	205, 595
BssMI	GATC	3 cut(s)	100, 241, 558
BssNAI	GTATAC	1 cut(s)	96
Bst1107I	GTATAC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	206, 597
Bst4CI	ACNGT	2 cut(s)	118, 530
Bst6I	CTCTTC	5 cut(s)	329, 334, 424, 499, 544
BstBAI	YACGTR	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	581, 706
BstDEI	CTNAG	6 cut(s)	52, 189, 198, 424, 572, 606
BstF5I	GGATG	2 cut(s)	355, 605
BstKTI	GATC	3 cut(s)	103, 244, 561
BstMAI	GTCTC	2 cut(s)	433, 725
BstMBI	GATC	3 cut(s)	100, 241, 558
BstNI	CCWGG	2 cut(s)	206, 597
BstSCI	CCNGG	2 cut(s)	204, 595
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	378, 713, 788
BstZ17I	GTATAC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	510, 841
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	355, 605
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	581, 706
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	194, 840
CspCI	CAANNNNNGTGG	4 cut(s)	465, 500, 818, 853
CviAII	CATG	4 cut(s)	76, 491, 688, 742
DdeI	CTNAG	6 cut(s)	52, 189, 198, 424, 572, 606
DpnI	GATC	3 cut(s)	102, 243, 560
DpnII	GATC	3 cut(s)	100, 241, 558
Eam1104I	CTCTTC	5 cut(s)	329, 334, 424, 499, 544
EarI	CTCTTC	5 cut(s)	329, 334, 424, 499, 544
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	852
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	204, 595
FaeI	CATG	4 cut(s)	79, 494, 691, 745
FaqI	GGGAC	2 cut(s)	207, 578
FatI	CATG	4 cut(s)	75, 490, 687, 741
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	367, 702, 777
FokI	GGATG	2 cut(s)	362, 612
Fsp4HI	GCNGC	3 cut(s)	367, 702, 777
GluI	GCNGC	3 cut(s)	367, 702, 777
GsuI	CTGGAG	2 cut(s)	324, 423
HaeIII	GGCC	2 cut(s)	510, 841
Hin1II	CATG	4 cut(s)	79, 494, 691, 745
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	4 cut(s)	318, 375, 441, 570
Hpy166II	GTNNAC	2 cut(s)	96, 769
Hpy188I	TCNGA	5 cut(s)	361, 397, 497, 575, 730
Hpy188III	TCNNGA	4 cut(s)	148, 245, 372, 426
Hpy8I	GTNNAC	2 cut(s)	96, 769
HpyAV	CCTTC	2 cut(s)	48, 797
HpyCH4III	ACNGT	2 cut(s)	118, 530
HpyCH4IV	ACGT	2 cut(s)	483, 851
HpyCH4V	TGCA	7 cut(s)	25, 35, 583, 664, 701, 754, 761
HpyF3I	CTNAG	6 cut(s)	52, 189, 198, 424, 572, 606
HpySE526I	ACGT	2 cut(s)	483, 851
Hsp92II	CATG	4 cut(s)	79, 494, 691, 745
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	100, 241, 558
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	280, 299
Lsp1109I	GCAGC	3 cut(s)	378, 713, 788
LweI	GCATC	2 cut(s)	566, 590
MaeII	ACGT	2 cut(s)	483, 851
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	3 cut(s)	102, 243, 560
MboI	GATC	3 cut(s)	100, 241, 558
MboII	GAAGA	6 cut(s)	346, 351, 441, 476, 516, 561
MluCI	AATT	7 cut(s)	8, 104, 142, 175, 232, 642, 646
MlyI	GAGTC	2 cut(s)	435, 564
MmeI	TCCRAC	3 cut(s)	289, 612, 765
MnlI	CCTC	9 cut(s)	265, 355, 405, 425, 500, 545, 766, 806, 854
MseI	TTAA	3 cut(s)	108, 408, 645
MslI	CAYNNNNRTG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	206, 597
MvaI	CCWGG	2 cut(s)	206, 597
NdeII	GATC	3 cut(s)	100, 241, 558
NlaIII	CATG	4 cut(s)	79, 494, 691, 745
NlaIV	GGNNCC	4 cut(s)	81, 195, 276, 842
NmuCI	GTSAC	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	318, 375
PkrI	GCNGC	3 cut(s)	368, 703, 778
PleI	GAGTC	2 cut(s)	435, 564
PmaCI	CACGTG	1 cut(s)	852
PmlI	CACGTG	1 cut(s)	852
PpsI	GAGTC	2 cut(s)	435, 564
Ppu21I	YACGTR	1 cut(s)	852
PpuMI	RGGWCCY	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	204, 595
PspCI	CACGTG	1 cut(s)	852
PspGI	CCWGG	2 cut(s)	204, 595
PspN4I	GGNNCC	4 cut(s)	81, 195, 276, 842
PspPI	GGNCC	2 cut(s)	194, 840
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	108, 408, 645
SatI	GCNGC	3 cut(s)	367, 702, 777
Sau3AI	GATC	3 cut(s)	100, 241, 558
Sau96I	GGNCC	2 cut(s)	194, 840
SchI	GAGTC	2 cut(s)	435, 564
ScrFI	CCNGG	2 cut(s)	206, 597
SfaNI	GCATC	2 cut(s)	566, 590
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	7 cut(s)	8, 104, 142, 175, 232, 642, 646
SsiI	CCGC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	204, 595
TaaI	ACNGT	2 cut(s)	118, 530
TaiI	ACGT	2 cut(s)	486, 854
TaqI	TCGA	1 cut(s)	675
TasI	AATT	7 cut(s)	8, 104, 142, 175, 232, 642, 646
TfiI	GAWTC	2 cut(s)	318, 375
Tru1I	TTAA	3 cut(s)	108, 408, 645
Tru9I	TTAA	3 cut(s)	108, 408, 645
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	3 cut(s)	366, 701, 776
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	479, 579, 704, 809
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	3 cut(s)	8, 142, 232
XmiI	GTMKAC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.