Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Reverse (-)

5671031 .. 5672706

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTCAGTTCACAGAAGATTTGAAGCCTTCTTTTCCTTTCTTAGACATTGAGCCAAGCAGTATACTTATAAACCAGTATGCAGACCAATTCAATCATCTTGGTGTTTTGGACTACTCAAGCTTGAATCACTTCCAAGGCTACATGCCTTTTTCAAGTGACAATTTCTTTGGCAACAGCCAAGGACCTGAATTCCCAGGAACCTTGGTCGAAAACTTTCCGGCTGGTTTTGTTCAACAGAACAGCAGCAGCGACAACAACTTGCAGAATGATGAGGCCTCAGCTGCTCAGTGCCTTGTCGCAGCTGGAAACCCTGAATTCCAAGAAAGCAAGAAGAGAATAGCAATGGAGATGTCAGAGAGCAGTTCTGGAGTCTCCAATCCCTCAGTTTCGAAAACTGGGATCAAGAGAAAAAATAGCTTGGGAAGAGGAAAGAGGGTGAAAATCAGTAATGAGGAGGAAGATGAGAAACCAAAGGAAGTGGTTCATGTTAGAGCCAGGAGAGGCCAAGCCACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAGACTGAGATGCTTGCAAGATATTGTCCCAGGTTGCTCTAAGACTATGGGAATGGCGGTAATGCTAGACGAGATAATTAACTATGTGCAGTCCTTGCAGAACCAGGTTGAGTTCCTGTCTATGAGGTTAACTGCAGCAAGCTCTTTCCATGACTTCAACACAGAGACAGAAGATGCTATGGAAACAATGCAGAGGGCAAAAGAGTTGGAGAGAGTGAAGATAGAAGCAGGATATGGAGGAGTAGTTGATAGTAGCTTCCAGTATTCCTCAACTAATTATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

284

Amino Acids

31.73

Weight (kDa)

5.19

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	174 - 221	8.5e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	179 - 223	4.2e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	191, 317
AgsI	TTSAA	6 cut(s)	25, 94, 127, 156, 236, 721
AjnI	CCWGG	4 cut(s)	196, 497, 592, 666
AluBI	AGCT	6 cut(s)	123, 284, 305, 420, 705, 819
AluI	AGCT	6 cut(s)	123, 284, 305, 420, 705, 819
Alw26I	GTCTC	3 cut(s)	379, 559, 722
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	276, 505
ApeKI	GCWGC	5 cut(s)	246, 249, 284, 302, 698
ApoI	RAATTY	2 cut(s)	191, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	3 cut(s)	131, 216, 483
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	451
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	280
BbvI	GCAGC	5 cut(s)	258, 261, 271, 314, 710
BciT130I	CCWGG	4 cut(s)	198, 499, 594, 668
BcoDI	GTCTC	3 cut(s)	379, 559, 722
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	696
BisI	GCNGC	5 cut(s)	247, 250, 285, 303, 699
BlsI	GCNGC	5 cut(s)	248, 251, 286, 304, 700
Bme1390I	CCNGG	4 cut(s)	198, 499, 594, 668
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	4 cut(s)	198, 499, 594, 668
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	563, 727
BmuI	ACTGGG	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	5 cut(s)	136, 181, 196, 204, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bse1I	ACTGG	3 cut(s)	76, 403, 823
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	4 cut(s)	198, 499, 594, 668
BseDI	CCNNGG	5 cut(s)	136, 181, 196, 204, 592
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	20, 294, 302, 399, 560
BseNI	ACTGG	3 cut(s)	76, 403, 823
BseRI	GAGGAG	2 cut(s)	470, 816
BseXI	GCAGC	5 cut(s)	258, 261, 271, 314, 710
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	2 cut(s)	278, 507
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	575
BsmAI	GTCTC	3 cut(s)	379, 559, 722
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	278, 507
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	2 cut(s)	278, 507
BspCNI	CTCAG	5 cut(s)	19, 293, 301, 398, 561
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	76, 403, 823
BssECI	CCNNGG	5 cut(s)	136, 181, 196, 204, 592
BssMI	GATC	1 cut(s)	402
BssNAI	GTATAC	1 cut(s)	65
BssT1I	CCWWGG	3 cut(s)	136, 181, 204
Bst1107I	GTATAC	1 cut(s)	65
Bst2UI	CCWGG	4 cut(s)	198, 499, 594, 668
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	3 cut(s)	329, 421, 541
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	578, 703
BstDEI	CTNAG	7 cut(s)	6, 43, 280, 288, 385, 569, 603
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	3 cut(s)	379, 559, 722
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 658
BstNI	CCWGG	4 cut(s)	198, 499, 594, 668
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	4 cut(s)	196, 497, 592, 666
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	5 cut(s)	258, 261, 271, 314, 710
BstZ17I	GTATAC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	278, 507
BtsIMutI	CAGTG	2 cut(s)	296, 513
Cac8I	GCNNGC	2 cut(s)	578, 703
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	666
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	3 cut(s)	145, 488, 713
DdeI	CTNAG	7 cut(s)	6, 43, 280, 288, 385, 569, 603
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	329, 421, 541
EarI	CTCTTC	3 cut(s)	329, 421, 541
Eco130I	CCWWGG	3 cut(s)	136, 181, 204
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	2 cut(s)	191, 317
EcoRII	CCWGG	4 cut(s)	196, 497, 592, 666
EcoT14I	CCWWGG	3 cut(s)	136, 181, 204
ErhI	CCWWGG	3 cut(s)	136, 181, 204
FaeI	CATG	3 cut(s)	148, 491, 716
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	144, 487, 712
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	247, 250, 285, 303, 699
Fsp4HI	GCNGC	5 cut(s)	247, 250, 285, 303, 699
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	5 cut(s)	247, 250, 285, 303, 699
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	278, 507
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	148, 491, 716
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	2 cut(s)	127, 372
HpaI	GTTAAC	1 cut(s)	693
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	3 cut(s)	12, 65, 693
Hpy188I	TCNGA	2 cut(s)	358, 854
Hpy188III	TCNNGA	2 cut(s)	369, 406
Hpy8I	GTNNAC	3 cut(s)	12, 65, 693
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	83, 265, 580, 652, 661, 698, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 658
HpyF3I	CTNAG	7 cut(s)	6, 43, 280, 288, 385, 569, 603
Hsp92II	CATG	3 cut(s)	148, 491, 716
KspAI	GTTAAC	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	402
Lsp1109I	GCAGC	5 cut(s)	258, 261, 271, 314, 710
LweI	GCATC	2 cut(s)	563, 727
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	158, 521
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	7 cut(s)	29, 346, 438, 473, 558, 746, 793
MluCI	AATT	6 cut(s)	89, 163, 191, 317, 639, 838
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	750
MroXI	GAANNNNTTC	3 cut(s)	131, 216, 483
MseI	TTAA	2 cut(s)	642, 692
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	284, 305
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	4 cut(s)	198, 499, 594, 668
MvaI	CCWGG	4 cut(s)	198, 499, 594, 668
MwoI	GCNNNNNNNGC	2 cut(s)	284, 658
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	3 cut(s)	148, 491, 716
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	158, 521
NspI	RCATGY	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	278
PdmI	GAANNNNTTC	3 cut(s)	131, 216, 483
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	248, 251, 286, 304, 700
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	4 cut(s)	196, 497, 592, 666
PspGI	CCWGG	4 cut(s)	196, 497, 592, 666
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	700
PvuII	CAGCTG	2 cut(s)	284, 305
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	642, 692
SatI	GCNGC	5 cut(s)	247, 250, 285, 303, 699
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	4 cut(s)	198, 499, 594, 668
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	563, 727
SfcI	CTRYAG	1 cut(s)	696
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	6 cut(s)	89, 163, 191, 317, 639, 838
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	4 cut(s)	196, 497, 592, 666
StyI	CCWWGG	3 cut(s)	136, 181, 204
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	210, 392
TasI	AATT	6 cut(s)	89, 163, 191, 317, 639, 838
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	642, 692
Tru9I	TTAA	2 cut(s)	642, 692
TscAI	CASTG	2 cut(s)	296, 520
TseFI	GTSAC	2 cut(s)	158, 521
TseI	GCWGC	5 cut(s)	246, 249, 284, 302, 698
Tsp45I	GTSAC	2 cut(s)	158, 521
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	296, 520
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	191, 317
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	3 cut(s)	131, 216, 483
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.