Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Reverse (-)

20428139 .. 20429464

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCTGAATTCACAGAAGATTTTCAAAGCATTAAACCTTCATTTCCTTTCTTAGATATTGACCCAAACATGGAACTAGTAAACCAGTTTGCAGACCAATTCAATATTCCAAGTGTCATGGAATATCCAAGCTTGAATTTCCACACCTACATACCCTTCTCAAACGACAGTTACTTGTTCAGCAATCAAGAACCCGAGTTCCCTGCCGGAAACATGGTCGAAAACTTTCCAAAATTAGAAGTTCATCAGATAGTTGCGGATGGAAATGAAAGCAAGAAGAGAATAGCAGTGGATGATGCATCACAGAGCAGCTCTGGAATCTCTACTCCCCCAGTTTCCGAAACTGGGATTACGCGAAAAAATAGCGCAGGAAGAGGAAAGAGGGTCAAGAGCAATGAGAAGGAAGATGAGAAACCAAAGGAAGTTGTTCATGTTAGAGCCAGGAGAGGGCAAGCTACTGATAGCCACAGTCTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAGACTGAGATGTTTGCAAAATATTGTCCCAGGATGCTCCAACAAGACGATGGGAATGGCGGTAATGTTGGACGAGATAATTAACTATGTTCAGTCCTTGCAGAACCAGATTGAGTTCCTATCTATGAGGCTGGCTGCAGCAAGCTCTTTCTATGACTTCAACTCAAGTACTGATGTTACGGAGACAATGCAGATAGCAGCAGAGTTGGAGAGATTGAAGAGAGAAGCTGCAGGATATGGAGGGTTTGGTGCTAGTTTCCAATCAACATCTTCAACTTGGTCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

5.27

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	355
AciI	CCGC	2 cut(s)	257, 566
AcsI	RAATTY	2 cut(s)	8, 136
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	3 cut(s)	70, 345, 447
AgsI	TTSAA	6 cut(s)	26, 103, 136, 667, 724, 780
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	440, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	5 cut(s)	132, 312, 455, 651, 734
AluI	AGCT	5 cut(s)	132, 312, 455, 651, 734
Alw26I	GTCTC	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	194
ApeKI	GCWGC	5 cut(s)	309, 641, 644, 704, 734
ApoI	RAATTY	2 cut(s)	8, 136
Asp700I	GAANNNNTTC	3 cut(s)	21, 225, 426
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	786
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	786
BbvI	GCAGC	5 cut(s)	321, 628, 656, 716, 721
BccI	CCATC	2 cut(s)	254, 550
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	2 cut(s)	442, 537
BcoDI	GTCTC	1 cut(s)	683
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	3 cut(s)	77, 473, 759
BfmI	CTRYAG	2 cut(s)	642, 735
BisI	GCNGC	5 cut(s)	310, 642, 645, 705, 735
BlsI	GCNGC	5 cut(s)	311, 643, 646, 706, 736
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	442, 537
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	2 cut(s)	442, 537
BmrI	ACTGGG	2 cut(s)	326, 354
BmsI	GCATC	3 cut(s)	286, 308, 530
BmuI	ACTGGG	2 cut(s)	326, 354
BpuEI	CTTGAG	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 345, 447
Bse1I	ACTGG	3 cut(s)	85, 332, 349
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	442, 537
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	265, 298, 545
BseLI	CCNNNNNNNGG	3 cut(s)	70, 345, 447
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	3 cut(s)	85, 332, 349
BseXI	GCAGC	5 cut(s)	321, 628, 656, 716, 721
Bsh1236I	CGCG	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	518, 772
BslI	CCNNNNNNNGG	3 cut(s)	70, 345, 447
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	518, 772
BsoBI	CYCGRG	1 cut(s)	194
BspACI	CCGC	2 cut(s)	257, 566
BspCNI	CTCAG	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	2 cut(s)	646, 739
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	85, 332, 349
BssECI	CCNNGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	442, 537
Bst4CI	ACNGT	2 cut(s)	170, 470
Bst6I	CTCTTC	4 cut(s)	272, 367, 484, 719
BstC8I	GCNNGC	3 cut(s)	453, 639, 649
BstDEI	CTNAG	2 cut(s)	52, 512
BstF5I	GGATG	3 cut(s)	265, 298, 545
BstFNI	CGCG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	368
BstMAI	GTCTC	1 cut(s)	683
BstNI	CCWGG	2 cut(s)	442, 537
BstSCI	CCNGG	2 cut(s)	440, 535
BstSFI	CTRYAG	2 cut(s)	642, 735
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	5 cut(s)	321, 628, 656, 716, 721
BtsCI	GGATG	3 cut(s)	265, 298, 545
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	453, 639, 649
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	786
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	4 cut(s)	70, 118, 214, 431
CviJI	RGCY	9 cut(s)	132, 312, 440, 455, 465, 637, 641, 651, 734
CviKI_1	RGCY	9 cut(s)	132, 312, 440, 455, 465, 637, 641, 651, 734
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	2 cut(s)	52, 512
Eam1104I	CTCTTC	4 cut(s)	272, 367, 484, 719
EarI	CTCTTC	4 cut(s)	272, 367, 484, 719
Eco47I	GGWCC	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	440, 535
EcoT22I	ATGCAT	1 cut(s)	301
FaeI	CATG	4 cut(s)	73, 121, 217, 434
FaiI	YATR	9 cut(s)	71, 119, 152, 215, 432, 594, 632, 660, 744
FaqI	GGGAC	2 cut(s)	518, 772
FatI	CATG	4 cut(s)	69, 117, 213, 430
Fnu4HI	GCNGC	5 cut(s)	310, 642, 645, 705, 735
FokI	GGATG	3 cut(s)	272, 305, 552
Fsp4HI	GCNGC	5 cut(s)	310, 642, 645, 705, 735
FspBI	CTAG	3 cut(s)	77, 473, 759
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	5 cut(s)	310, 642, 645, 705, 735
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	73, 121, 217, 434
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	7, 249, 340
Hpy188III	TCNNGA	3 cut(s)	188, 315, 388
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	48, 166, 394
HpyCH4III	ACNGT	2 cut(s)	170, 470
HpyCH4V	TGCA	7 cut(s)	92, 299, 523, 607, 644, 697, 737
HpyF3I	CTNAG	2 cut(s)	52, 512
Hsp92II	CATG	4 cut(s)	73, 121, 217, 434
HspAI	GCGC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	5 cut(s)	321, 628, 656, 716, 721
LweI	GCATC	3 cut(s)	286, 308, 530
MaeI	CTAG	3 cut(s)	77, 473, 759
MaeIII	GTNAC	2 cut(s)	170, 682
MboII	GAAGA	7 cut(s)	29, 289, 384, 416, 501, 736, 768
MluCI	AATT	5 cut(s)	8, 98, 136, 233, 585
MmeI	TCCRAC	3 cut(s)	555, 570, 693
MnlI	CCTC	6 cut(s)	368, 375, 440, 485, 627, 740
Mph1103I	ATGCAT	1 cut(s)	301
MroXI	GAANNNNTTC	3 cut(s)	21, 225, 426
MseI	TTAA	2 cut(s)	33, 588
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	442, 537
MvaI	CCWGG	2 cut(s)	442, 537
MvnI	CGCG	1 cut(s)	355
NlaIII	CATG	4 cut(s)	73, 121, 217, 434
NlaIV	GGNNCC	1 cut(s)	788
NsiI	ATGCAT	1 cut(s)	301
PdmI	GAANNNNTTC	3 cut(s)	21, 225, 426
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	311, 643, 646, 706, 736
Psp6I	CCWGG	2 cut(s)	440, 535
PspGI	CCWGG	2 cut(s)	440, 535
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	786
PstI	CTGCAG	2 cut(s)	646, 739
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	33, 588
SatI	GCNGC	5 cut(s)	310, 642, 645, 705, 735
Sau96I	GGNCC	1 cut(s)	786
ScaI	AGTACT	1 cut(s)	676
ScrFI	CCNGG	2 cut(s)	442, 537
SetI	ASST	7 cut(s)	40, 134, 149, 314, 457, 653, 736
SfaNI	GCATC	3 cut(s)	286, 308, 530
SfcI	CTRYAG	2 cut(s)	642, 735
SinI	GGWCC	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	5 cut(s)	8, 98, 136, 233, 585
SsiI	CCGC	2 cut(s)	257, 566
SspI	AATATT	2 cut(s)	106, 529
SspMI	CTAG	3 cut(s)	77, 473, 759
StyD4I	CCNGG	2 cut(s)	440, 535
TaaI	ACNGT	2 cut(s)	170, 470
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	8, 98, 136, 233, 585
TatI	WGTACW	1 cut(s)	674
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	33, 588
Tru9I	TTAA	2 cut(s)	33, 588
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	5 cut(s)	309, 641, 644, 704, 734
TspDTI	ATGAA	5 cut(s)	30, 233, 282, 419, 519
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	786
XapI	RAATTY	2 cut(s)	8, 136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmnI	GAANNNNTTC	3 cut(s)	21, 225, 426
XspI	CTAG	3 cut(s)	77, 473, 759
ZrmI	AGTACT	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.