Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Forward (+)

6763992 .. 6765708

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTCAGTTCACAGGAGATTTGAAGCCTTCATTTCCTTTCTTAGACATTCAGCCAAACCATATTGAACTTCTAAACCAGTATGCAGACCAAGTCAATCACCTTGGTGTTTTGGACTACTCAAGCTTGAATCATTTTCAAGGCTGCTTGCCTTTTTCAAGTGACAATTTTTTTGGTAACAACAAAGGACCTGAATTTCCAGGAAGCTTGGTTGAAAACTTTCCGGCTGGTTTTGTTCAACAGAATAGCAGCAGCAACAACATCAACAGCAGCAGCAACAACAACAACAACAACTTGCAGAATGATGAGGCCTCAGCTGCTCAGTGCCTCATCCCCGCTCAAAACCATGAATTCCAAGAAAGCAAGAAGAGAATTGCAATGGAGATGTCAGAGAGCAGTTCTGTAGTCTCCAATCCCCCAGTTCCGAAAACTGGGATCAAGGGAAAAAATAGCTTGGGAAGAGGAAAAAGGGTGAAAACCAGTAGTGAGGAGGAAGATGAGAAACCAAGGGAAGTGGTACATGTTAGAGCCAGGAGAGGCCAAGCCACTGATAGCCACAGCTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAGAATGAGATGCTTGCAAGATATTGTCCCAGGTTGCTCTAAGACTATGGGAATGGCGGTAATGCTAGACGAGATAATTAACTATGTGCAGTCCTTGCAGAACCAGGTTGAGTTCCTGTCTATGAAGTTAACTGCAGCAAGCTCTTTCCATGACTTCAACTCAGAGACAGAAGATGCTATGGAAACAATGCAGAGGGCAAAAGAGTTGGAGATAGTGAAGATAGAAGCAGGATATGGAGGAGTAGTTGATAGTAGCTTCCAGTATTCCTCAACTAATTATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

296

Amino Acids

32.84

Weight (kDa)

5.45

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	190 - 237	9.6e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	338
AciI	CCGC	2 cut(s)	336, 653
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	194, 350
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	8 cut(s)	25, 68, 130, 140, 159, 215, 239, 754
AjnI	CCWGG	4 cut(s)	199, 530, 625, 699
AleI	CACNNNNGTG	1 cut(s)	105
AluBI	AGCT	7 cut(s)	126, 207, 317, 453, 561, 738, 852
AluI	AGCT	7 cut(s)	126, 207, 317, 453, 561, 738, 852
Alw26I	GTCTC	2 cut(s)	412, 755
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	2 cut(s)	309, 538
ApeKI	GCWGC	7 cut(s)	144, 249, 252, 270, 273, 317, 731
ApoI	RAATTY	2 cut(s)	194, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	92, 484
AvaII	GGWCC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	7 cut(s)	131, 261, 264, 282, 285, 304, 743
BciT130I	CCWGG	4 cut(s)	201, 532, 627, 701
BcoDI	GTCTC	2 cut(s)	412, 755
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	2 cut(s)	402, 729
BisI	GCNGC	7 cut(s)	145, 250, 253, 271, 274, 318, 732
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	7 cut(s)	146, 251, 254, 272, 275, 319, 733
Bme1390I	CCNGG	4 cut(s)	201, 532, 627, 701
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	4 cut(s)	201, 532, 627, 701
BmrI	ACTGGG	2 cut(s)	413, 441
BmsI	GCATC	2 cut(s)	596, 760
BmuI	ACTGGG	2 cut(s)	413, 441
Bpu10I	CCTNAGC	1 cut(s)	313
Bpu1102I	GCTNAGC	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	103, 506, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	5 cut(s)	79, 419, 436, 480, 856
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	4 cut(s)	201, 532, 627, 701
BseDI	CCNNGG	3 cut(s)	103, 506, 625
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	20, 327, 335, 771
BseNI	ACTGG	5 cut(s)	79, 419, 436, 480, 856
BseRI	GAGGAG	2 cut(s)	503, 849
BseXI	GCAGC	7 cut(s)	131, 261, 264, 282, 285, 304, 743
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	2 cut(s)	311, 540
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	412, 755
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	311, 540
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	562
BspACI	CCGC	2 cut(s)	336, 653
BspANI	GGCC	2 cut(s)	311, 540
BspCNI	CTCAG	4 cut(s)	19, 326, 334, 770
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	5 cut(s)	79, 419, 436, 480, 856
BssECI	CCNNGG	3 cut(s)	103, 506, 625
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	103, 506
Bst2UI	CCWGG	4 cut(s)	201, 532, 627, 701
Bst6I	CTCTTC	3 cut(s)	362, 454, 574
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	3 cut(s)	149, 611, 736
BstDEI	CTNAG	7 cut(s)	6, 43, 313, 321, 562, 636, 757
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	2 cut(s)	412, 755
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 691
BstNI	CCWGG	4 cut(s)	201, 532, 627, 701
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	4 cut(s)	199, 530, 625, 699
BstSFI	CTRYAG	2 cut(s)	402, 729
BstV1I	GCAGC	7 cut(s)	131, 261, 264, 282, 285, 304, 743
BsuRI	GGCC	2 cut(s)	311, 540
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	329, 546
Cac8I	GCNNGC	3 cut(s)	149, 611, 736
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	518
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	3 cut(s)	347, 521, 746
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	7 cut(s)	6, 43, 313, 321, 562, 636, 757
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	3 cut(s)	362, 454, 574
EarI	CTCTTC	3 cut(s)	362, 454, 574
Eco130I	CCWWGG	2 cut(s)	103, 506
Eco147I	AGGCCT	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	4 cut(s)	199, 530, 625, 699
EcoT14I	CCWWGG	2 cut(s)	103, 506
ErhI	CCWWGG	2 cut(s)	103, 506
FaeI	CATG	3 cut(s)	350, 524, 749
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	346, 520, 745
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	7 cut(s)	145, 250, 253, 271, 274, 318, 732
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	7 cut(s)	145, 250, 253, 271, 274, 318, 732
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	7 cut(s)	145, 250, 253, 271, 274, 318, 732
HaeIII	GGCC	2 cut(s)	311, 540
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	3 cut(s)	350, 524, 749
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HindIII	AAGCTT	2 cut(s)	124, 205
HinfI	GANTC	1 cut(s)	130
HpaI	GTTAAC	1 cut(s)	726
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	92, 484
Hpy166II	GTNNAC	2 cut(s)	12, 726
Hpy188I	TCNGA	4 cut(s)	391, 426, 760, 887
Hpy8I	GTNNAC	2 cut(s)	12, 726
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	8 cut(s)	86, 298, 377, 613, 685, 694, 731, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 691
HpyF3I	CTNAG	7 cut(s)	6, 43, 313, 321, 562, 636, 757
Hsp92II	CATG	3 cut(s)	350, 524, 749
KspAI	GTTAAC	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	435
Lsp1109I	GCAGC	7 cut(s)	131, 261, 264, 282, 285, 304, 743
LweI	GCATC	2 cut(s)	596, 760
MabI	ACCWGGT	1 cut(s)	699
MaeI	CTAG	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	161, 176
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	1 cut(s)	435
MboII	GAAGA	6 cut(s)	379, 471, 506, 591, 779, 826
MluCI	AATT	6 cut(s)	166, 194, 350, 372, 672, 871
MmeI	TCCRAC	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	2 cut(s)	675, 725
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	201, 532, 627, 701
MvaI	CCWGG	4 cut(s)	201, 532, 627, 701
MwoI	GCNNNNNNNGC	2 cut(s)	317, 691
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	350, 524, 749
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	311
PciI	ACATGT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	7 cut(s)	146, 251, 254, 272, 275, 319, 733
PpuMI	RGGWCCY	1 cut(s)	188
PscI	ACATGT	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	4 cut(s)	199, 530, 625, 699
PspGI	CCWGG	4 cut(s)	199, 530, 625, 699
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	675, 725
SatI	GCNGC	7 cut(s)	145, 250, 253, 271, 274, 318, 732
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	4 cut(s)	201, 532, 627, 701
SexAI	ACCWGGT	1 cut(s)	699
SfaNI	GCATC	2 cut(s)	596, 760
SfcI	CTRYAG	2 cut(s)	402, 729
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	6 cut(s)	166, 194, 350, 372, 672, 871
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	336, 653
SspMI	CTAG	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	199, 530, 625, 699
StyI	CCWWGG	2 cut(s)	103, 506
TasI	AATT	6 cut(s)	166, 194, 350, 372, 672, 871
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	675, 725
Tru9I	TTAA	2 cut(s)	675, 725
TscAI	CASTG	2 cut(s)	329, 553
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	7 cut(s)	144, 249, 252, 270, 273, 317, 731
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	21, 363, 609, 734
TspRI	CASTG	2 cut(s)	329, 553
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	2 cut(s)	194, 350
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.