Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Forward (+)

63528544 .. 63529874

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTCAGTTCACAGAAGATTTGAAGCCTTCTTTTCCTTTCTTAGACATTGAGCCAAGCAGTATTGAACTTATAAACCAGTATGCAGACCAATTCAATCATCTTGGTGTTTTGGACTACTCAAGCTTGAATCACTTCCAAGGCTACATGCCTTTTTCAAGTGACAATTTCTTTGGCAACAGCCAAGGACCTGAATTCCCAGGAACCTTGGTCGAAAACTTTCCGGCTGGTTTTGTTCAACAGAACAGCAGCAGCGACAAAAACTTGCAGAATGATGAGGCCTCAGCTGCTCAGTGCCTTGTCGCAGCTGGAAACCCTGAATTCCAAGAAAGCAAGAAGAGAATAGCAATGGAGATGTCAGAGAGCAGTTCTGGAGTCTCCAATCCCTCAGTTTCGAAAACTGGGATCAAGAGAAAAAATAGCTTGGGAAGAGGAAAGAGGGTGAAAATCAGTAATGAGGAGGAAGATGAGAAACCAAAGGAAGTGGTTCATGTTAGAGCCAGGAGAGGCCAAGCCACTGACAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAGACTGAGATGCTTGCAAGATATTGTCCCAGGTTGCTCTAAGACTATGGGAATGGCGGTAATGCTAGACGAGATAATTAACTATGTGCAGTCCTTGCAGAACCAGGTTGAGTTCCTGTCTATGAAGTTAACTGCAGCAAGCTCTTTCCATGACTTCAACTCAGAGACAGAAGATGCTATGGAAACAATGCAGAGGGCAAAAGAGTTGGAGAGAGTGAAGATAGAAGCAGGATATGGAGGAGTAGTTGACAGTAGCTTCCAGTATTCCTCAACTAATTATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

286

Amino Acids

31.83

Weight (kDa)

5.2

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	175 - 222	8.6e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	180 - 224	3.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	194, 320
AgsI	TTSAA	7 cut(s)	25, 68, 97, 130, 159, 239, 724
AjnI	CCWGG	4 cut(s)	199, 500, 595, 669
AluBI	AGCT	6 cut(s)	126, 287, 308, 423, 708, 822
AluI	AGCT	6 cut(s)	126, 287, 308, 423, 708, 822
Alw26I	GTCTC	3 cut(s)	382, 562, 725
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	279, 508
ApeKI	GCWGC	5 cut(s)	249, 252, 287, 305, 701
ApoI	RAATTY	2 cut(s)	194, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	3 cut(s)	134, 219, 486
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	261, 264, 274, 317, 713
BciT130I	CCWGG	4 cut(s)	201, 502, 597, 671
BcoDI	GTCTC	3 cut(s)	382, 562, 725
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	699
BisI	GCNGC	5 cut(s)	250, 253, 288, 306, 702
BlsI	GCNGC	5 cut(s)	251, 254, 289, 307, 703
Bme1390I	CCNGG	4 cut(s)	201, 502, 597, 671
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	4 cut(s)	201, 502, 597, 671
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	566, 730
BmuI	ACTGGG	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	139, 184, 199, 207, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bse1I	ACTGG	3 cut(s)	79, 406, 826
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	201, 502, 597, 671
BseDI	CCNNGG	5 cut(s)	139, 184, 199, 207, 595
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	6 cut(s)	20, 297, 305, 402, 563, 741
BseNI	ACTGG	3 cut(s)	79, 406, 826
BseRI	GAGGAG	2 cut(s)	473, 819
BseXI	GCAGC	5 cut(s)	261, 264, 274, 317, 713
BsgI	GTGCAG	1 cut(s)	674
BshFI	GGCC	2 cut(s)	281, 510
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	578
BsmAI	GTCTC	3 cut(s)	382, 562, 725
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	2 cut(s)	281, 510
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	2 cut(s)	281, 510
BspCNI	CTCAG	6 cut(s)	19, 296, 304, 401, 564, 740
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	3 cut(s)	79, 406, 826
BssECI	CCNNGG	5 cut(s)	139, 184, 199, 207, 595
BssMI	GATC	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	139, 184, 207
Bst2UI	CCWGG	4 cut(s)	201, 502, 597, 671
Bst4CI	ACNGT	3 cut(s)	524, 530, 818
Bst6I	CTCTTC	3 cut(s)	332, 424, 544
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	581, 706
BstDEI	CTNAG	8 cut(s)	6, 43, 283, 291, 388, 572, 606, 727
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	3 cut(s)	382, 562, 725
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 661
BstNI	CCWGG	4 cut(s)	201, 502, 597, 671
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	4 cut(s)	199, 500, 595, 669
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	5 cut(s)	261, 264, 274, 317, 713
BsuRI	GGCC	2 cut(s)	281, 510
BtsIMutI	CAGTG	2 cut(s)	299, 516
Cac8I	GCNNGC	2 cut(s)	581, 706
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	669
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	3 cut(s)	148, 491, 716
DdeI	CTNAG	8 cut(s)	6, 43, 283, 291, 388, 572, 606, 727
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	3 cut(s)	332, 424, 544
EarI	CTCTTC	3 cut(s)	332, 424, 544
Eco130I	CCWWGG	3 cut(s)	139, 184, 207
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	2 cut(s)	194, 320
EcoRII	CCWGG	4 cut(s)	199, 500, 595, 669
EcoT14I	CCWWGG	3 cut(s)	139, 184, 207
ErhI	CCWWGG	3 cut(s)	139, 184, 207
FaeI	CATG	3 cut(s)	151, 494, 719
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	147, 490, 715
Fnu4HI	GCNGC	5 cut(s)	250, 253, 288, 306, 702
Fsp4HI	GCNGC	5 cut(s)	250, 253, 288, 306, 702
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	5 cut(s)	250, 253, 288, 306, 702
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	281, 510
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	3 cut(s)	151, 494, 719
HincII	GTYRAC	2 cut(s)	696, 814
HindII	GTYRAC	2 cut(s)	696, 814
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	130, 375
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	3 cut(s)	12, 696, 814
Hpy188I	TCNGA	3 cut(s)	361, 730, 857
Hpy188III	TCNNGA	2 cut(s)	372, 409
Hpy8I	GTNNAC	3 cut(s)	12, 696, 814
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	524, 530, 818
HpyCH4V	TGCA	7 cut(s)	86, 268, 583, 655, 664, 701, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 661
HpyF3I	CTNAG	8 cut(s)	6, 43, 283, 291, 388, 572, 606, 727
Hsp92II	CATG	3 cut(s)	151, 494, 719
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	1 cut(s)	405
Lsp1109I	GCAGC	5 cut(s)	261, 264, 274, 317, 713
LweI	GCATC	2 cut(s)	566, 730
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	161, 524
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	7 cut(s)	29, 349, 441, 476, 561, 749, 796
MluCI	AATT	6 cut(s)	92, 166, 194, 320, 642, 841
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	753
MroXI	GAANNNNTTC	3 cut(s)	134, 219, 486
MseI	TTAA	2 cut(s)	645, 695
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	287, 308
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	201, 502, 597, 671
MvaI	CCWGG	4 cut(s)	201, 502, 597, 671
MwoI	GCNNNNNNNGC	2 cut(s)	287, 661
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	3 cut(s)	151, 494, 719
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	161, 524
NspI	RCATGY	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	281
PdmI	GAANNNNTTC	3 cut(s)	134, 219, 486
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	5 cut(s)	251, 254, 289, 307, 703
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	4 cut(s)	199, 500, 595, 669
PspGI	CCWGG	4 cut(s)	199, 500, 595, 669
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	2 cut(s)	287, 308
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	645, 695
SatI	GCNGC	5 cut(s)	250, 253, 288, 306, 702
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	4 cut(s)	201, 502, 597, 671
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	2 cut(s)	566, 730
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	395
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	6 cut(s)	92, 166, 194, 320, 642, 841
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	1 cut(s)	632
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	4 cut(s)	199, 500, 595, 669
StyI	CCWWGG	3 cut(s)	139, 184, 207
TaaI	ACNGT	3 cut(s)	524, 530, 818
TaqI	TCGA	2 cut(s)	213, 395
TasI	AATT	6 cut(s)	92, 166, 194, 320, 642, 841
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	645, 695
Tru9I	TTAA	2 cut(s)	645, 695
TscAI	CASTG	2 cut(s)	299, 523
TseFI	GTSAC	2 cut(s)	161, 524
TseI	GCWGC	5 cut(s)	249, 252, 287, 305, 701
Tsp45I	GTSAC	2 cut(s)	161, 524
TspDTI	ATGAA	2 cut(s)	479, 704
TspRI	CASTG	2 cut(s)	299, 523
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	2 cut(s)	194, 320
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	3 cut(s)	134, 219, 486
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.