Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Forward (+)

27759941 .. 27761588

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGAATCTCTCTTCTGATTTTCAGACATTTACAATGGATGATCCCATAAGACAACTAGCAGAACTGAGCAACACGCTTCATCATTTCCAAACATTTCCTCCTCCTTTCTCTTCTTCTCTCGATTCTCTTTTCTTTCATAATCAATTCCCTGATCATTTTCCCGGAAAATCTCTCGAGAATAATTTTCATCAAGGGATATTCTTCCCTTCTAATATCCAAAACAACGAAGAGTCTTCTTCACAATTCGATACCAAGAAGAGAAAATCATTAATGGAAGCTGTTTCTACGTCGGAGAACAGTGTCTCTGATCAAACTCTCTCTACCTCTTCTGCTCAAGTTTCCATAAATGGAAATATTTCGACAAAAAATAATTCTTCAAGGAGAGGGAAGAGGTCGAAGAATAGAGAAGAAGAGAAAGAGAGAGAAGTTGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCATAGCAGAACGGGTTCGACGAGGGAAAATAAACGAGAGATTGAAATGCTTGCAAGATATAGTCCCCGGATGTTATAAGACAATGGGAATGGCTACTATGCTTGATGAGATAATTAATTACGTCCAGTCCTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAGCAGCAAGTTCGTATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGAAGGCAAAGGCACGTGAGGCAGTGGAGATGGGTCAAGGGAGGGATGGGAGTTCTGTCTTCCATTCATCATCGTGGACCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

261

Amino Acids

29.5

Weight (kDa)

6.46

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	157 - 204	5e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	162 - 206	1.2e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AclWI	GGATC	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	716
AgsI	TTSAA	2 cut(s)	381, 520
AluBI	AGCT	3 cut(s)	281, 446, 640
AluI	AGCT	3 cut(s)	281, 446, 640
Alw26I	GTCTC	2 cut(s)	310, 671
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	647
AseI	ATTAAT	2 cut(s)	272, 591
Asp700I	GAANNNNTTC	3 cut(s)	358, 432, 489
AspS9I	GGNCC	1 cut(s)	777
AsuC2I	CCSGG	2 cut(s)	165, 543
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	777
BbrPI	CACGTG	1 cut(s)	716
BbsI	GAAGAC	2 cut(s)	228, 751
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	2 cut(s)	724, 740
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BclI	TGATCA	2 cut(s)	154, 310
BcnI	CCSGG	2 cut(s)	165, 543
BcoDI	GTCTC	2 cut(s)	310, 671
BfaI	CTAG	2 cut(s)	59, 447
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	2 cut(s)	165, 543
Bme18I	GGWCC	1 cut(s)	777
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	1 cut(s)	779
BmrFI	CCNGG	2 cut(s)	165, 543
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	2 cut(s)	228, 751
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	165, 543
BsaAI	YACGTR	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bse1I	ACTGG	1 cut(s)	601
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	3 cut(s)	46, 551, 751
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	659
BshFI	GGCC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	165, 543
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	310, 671
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	43, 154, 310
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	779
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	43, 154, 310
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	8 cut(s)	19, 118, 225, 254, 334, 386, 408, 445
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	46, 551, 751
BstKTI	GATC	3 cut(s)	46, 157, 313
BstMAI	GTCTC	2 cut(s)	310, 671
BstMBI	GATC	3 cut(s)	43, 154, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	163, 541
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	2 cut(s)	228, 751
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	46, 551, 751
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	3 cut(s)	307, 462, 729
Cac8I	GCNNGC	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	777
CviAII	CATG	2 cut(s)	437, 697
CviJI	RGCY	7 cut(s)	281, 446, 456, 461, 471, 569, 640
CviKI_1	RGCY	7 cut(s)	281, 446, 456, 461, 471, 569, 640
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	45, 156, 312
DpnII	GATC	3 cut(s)	43, 154, 310
Eam1104I	CTCTTC	8 cut(s)	19, 118, 225, 254, 334, 386, 408, 445
EarI	CTCTTC	8 cut(s)	19, 118, 225, 254, 334, 386, 408, 445
Eco47I	GGWCC	1 cut(s)	777
Eco72I	CACGTG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	2 cut(s)	440, 700
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	436, 696
FbaI	TGATCA	2 cut(s)	154, 310
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	53, 558, 758
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	59, 447
GluI	GCNGC	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	165, 543
Hin1II	CATG	2 cut(s)	440, 700
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	7, 125, 233, 692
HpaII	CCGG	2 cut(s)	165, 543
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	5 cut(s)	19, 27, 295, 310, 676
Hpy188III	TCNNGA	3 cut(s)	122, 176, 178
Hpy8I	GTNNAC	1 cut(s)	777
Hpy99I	CGWCG	2 cut(s)	295, 498
HpyAV	CCTTC	2 cut(s)	219, 697
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	3 cut(s)	290, 597, 715
HpyCH4V	TGCA	2 cut(s)	529, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	3 cut(s)	290, 597, 715
Hsp92II	CATG	2 cut(s)	440, 700
Ksp22I	TGATCA	2 cut(s)	154, 310
Kzo9I	GATC	3 cut(s)	43, 154, 310
LpnPI	CCDG	4 cut(s)	165, 178, 556, 614
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	2 cut(s)	59, 447
MaeII	ACGT	3 cut(s)	290, 597, 715
MalI	GATC	3 cut(s)	45, 156, 312
MboI	GATC	3 cut(s)	43, 154, 310
MluCI	AATT	6 cut(s)	146, 184, 245, 373, 588, 592
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	111, 114, 337, 380, 387, 446, 491, 712, 735
MroXI	GAANNNNTTC	3 cut(s)	358, 432, 489
MseI	TTAA	3 cut(s)	272, 591, 669
MslI	CAYNNNNRTG	1 cut(s)	772
MspI	CCGG	2 cut(s)	165, 543
MspR9I	CCNGG	2 cut(s)	165, 543
MwoI	GCNNNNNNNGC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	165, 543
NdeII	GATC	3 cut(s)	43, 154, 310
NlaIII	CATG	2 cut(s)	440, 700
NlaIV	GGNNCC	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PdmI	GAANNNNTTC	3 cut(s)	358, 432, 489
PfeI	GAWTC	3 cut(s)	7, 125, 692
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	241
PmaCI	CACGTG	1 cut(s)	716
PmlI	CACGTG	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	716
PshBI	ATTAAT	2 cut(s)	272, 591
PsiI	TTATAA	1 cut(s)	552
PspCI	CACGTG	1 cut(s)	716
PspN4I	GGNNCC	1 cut(s)	779
PspPI	GGNCC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	772
SaqAI	TTAA	3 cut(s)	272, 591, 669
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	43, 154, 310
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	165, 543
SetI	ASST	8 cut(s)	283, 293, 329, 398, 448, 600, 642, 718
SfaNI	GCATC	1 cut(s)	673
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	777
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	2 cut(s)	176, 336
SmoI	CTYRAG	2 cut(s)	176, 336
Sse9I	AATT	6 cut(s)	146, 184, 245, 373, 588, 592
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	59, 447
StyD4I	CCNGG	2 cut(s)	163, 541
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	3 cut(s)	293, 600, 718
TaqI	TCGA	7 cut(s)	123, 177, 249, 362, 398, 493, 621
TasI	AATT	6 cut(s)	146, 184, 245, 373, 588, 592
TfiI	GAWTC	3 cut(s)	7, 125, 692
Tru1I	TTAA	3 cut(s)	272, 591, 669
Tru9I	TTAA	3 cut(s)	272, 591, 669
TscAI	CASTG	3 cut(s)	307, 469, 729
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	6 cut(s)	71, 128, 179, 425, 650, 756
TspRI	CASTG	3 cut(s)	307, 469, 729
VpaK11BI	GGWCC	1 cut(s)	777
VspI	ATTAAT	2 cut(s)	272, 591
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	3 cut(s)	358, 432, 489
XspI	CTAG	2 cut(s)	59, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.