Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010824

Physical Location & Seq

Genomic Coordinates Reverse (-)

34934551 .. 34935835

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1217100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGCAACAGAGAGCAGCTCCGGAATCTCTACTCCCCCAGTTTCTGAAACCGGGGTCAAGCGAAAAAATCGCAGAAAGAGGAAAGAGGGTCAAGAGCAATGAGAAGGAAGATGAGAAACCAAAGGAAGTTGTTCACGTTAGAGCCAGGAGAGGCCAAGCAACTAACAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAAAGGCTGACATGTTTACAAGATATTGTCCCAGGGTGCTCTAAGACGATGGGAATGGCGGTAATGTTGGACGAGATAATTAACTATGTTCAGTCCTTGCAAAACCAGATTGAGTTCCTATCTATGAAGCTAGCCACAGCGAGCTCTTTCTATGACTTCAACTCAGAGACTGATGTTACGGAAACAATGAAGATAGCAGGAGAGTTGGAGAGATTGAAGAGAGAAGCTGCAGGATATGGAGGATTTGGTGCTAGCTTCCACTCAACATCTTCAACTTGGTCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

8.91

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	56 - 104	8.6e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	62 - 107	5e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18400 AT1G18400 AT1G73830 AT1G73830
fragaria_vesca	FvH4_5g11950 FvH4_5g11950
malus_domestica	MD06G1217100.v1.1 MD14G1227400.v1.1
prunus_persica	Prupe.5G222200_v2.0.a1
pyrus_communis	pycom06g19340 pycom14g18890
rosa_chinensis	RchiOBHm_Chr7g0185551
rosa_laevigata	RLG00000004900
rosa_multiflora	Rmu_sc0010190.1_g000010
rosa_roxburghii	Rroxscaffold_3G00268820
rosa_samantha	Rh7AG072400 Rh7BG075400 Rh7CG075500 Rh7DG075200
rosa_wichuraiana	Rw7G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	370, 427, 483
AjnI	CCWGG	2 cut(s)	146, 241
AluBI	AGCT	5 cut(s)	20, 340, 354, 437, 465
AluI	AGCT	5 cut(s)	20, 340, 354, 437, 465
Alw21I	GWGCWC	2 cut(s)	251, 356
Alw26I	GTCTC	1 cut(s)	371
AlwNI	CAGNNNCTG	2 cut(s)	46, 380
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	17, 437
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	54
AsuNHI	GCTAGC	2 cut(s)	340, 461
AvaII	GGWCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	251, 356
BbvI	GCAGC	2 cut(s)	29, 424
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	148, 243
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	3 cut(s)	179, 341, 462
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	18, 438
BlsI	GCNGC	2 cut(s)	19, 439
Bme1390I	CCNGG	3 cut(s)	54, 148, 243
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	3 cut(s)	54, 148, 243
BmrI	ACTGGG	1 cut(s)	34
BmtI	GCTAGC	2 cut(s)	344, 465
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	53, 241, 242
BsaWI	WCCGGW	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	106
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	148, 243
BseDI	CCNNGG	3 cut(s)	53, 241, 242
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	29, 424
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	251, 356
BsiSI	CCGG	2 cut(s)	23, 53
BslFI	GGGAC	2 cut(s)	224, 475
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	2 cut(s)	224, 475
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	251, 356
Bsp13I	TCCGGA	1 cut(s)	22
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	386
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	491
BspMAI	CTGCAG	1 cut(s)	442
BspOI	GCTAGC	2 cut(s)	344, 465
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	53, 241, 242
Bst2UI	CCWGG	2 cut(s)	148, 243
Bst4CI	ACNGT	2 cut(s)	170, 176
Bst6I	CTCTTC	2 cut(s)	190, 422
BstC8I	GCNNGC	3 cut(s)	342, 352, 463
BstDEI	CTNAG	2 cut(s)	252, 373
BstMAI	GTCTC	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	148, 243
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	52, 146, 241
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	29, 424
BsuRI	GGCC	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	342, 352, 463
CaiI	CAGNNNCTG	2 cut(s)	46, 380
Cfr13I	GGNCC	1 cut(s)	489
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	9 cut(s)	20, 146, 156, 217, 340, 344, 354, 437, 465
CviKI_1	RGCY	9 cut(s)	20, 146, 156, 217, 340, 344, 354, 437, 465
DdeI	CTNAG	2 cut(s)	252, 373
Eam1104I	CTCTTC	2 cut(s)	190, 422
EarI	CTCTTC	2 cut(s)	190, 422
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	146, 241
EcoT38I	GRGCYC	1 cut(s)	356
FaeI	CATG	1 cut(s)	225
FaiI	YATR	5 cut(s)	223, 297, 335, 363, 447
FaqI	GGGAC	2 cut(s)	224, 475
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	18, 438
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	18, 438
FspBI	CTAG	3 cut(s)	179, 341, 462
GluI	GCNGC	2 cut(s)	18, 438
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	23, 53
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	23, 53
Hpy166II	GTNNAC	2 cut(s)	136, 227
Hpy188I	TCNGA	2 cut(s)	48, 376
Hpy188III	TCNNGA	2 cut(s)	23, 94
Hpy8I	GTNNAC	2 cut(s)	136, 227
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	170, 176
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	7, 310, 440
HpyF3I	CTNAG	2 cut(s)	252, 373
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	2 cut(s)	29, 424
MaeI	CTAG	3 cut(s)	179, 341, 462
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	170, 385
MboII	GAAGA	5 cut(s)	122, 207, 412, 439, 471
MhlI	GDGCHC	2 cut(s)	251, 356
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	2 cut(s)	258, 396
MnlI	CCTC	5 cut(s)	74, 81, 146, 191, 443
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	291
MspI	CCGG	2 cut(s)	23, 53
MspR9I	CCNGG	3 cut(s)	54, 148, 243
MvaI	CCWGG	2 cut(s)	148, 243
NciI	CCSGG	1 cut(s)	54
NheI	GCTAGC	2 cut(s)	340, 461
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	225
PasI	CCCWGGG	1 cut(s)	242
PciI	ACATGT	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	19, 439
PscI	ACATGT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	146, 241
PspGI	CCWGG	2 cut(s)	146, 241
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	2 cut(s)	46, 380
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	18, 438
Sau96I	GGNCC	1 cut(s)	489
ScrFI	CCNGG	3 cut(s)	54, 148, 243
SduI	GDGCHC	2 cut(s)	251, 356
SetI	ASST	6 cut(s)	22, 141, 342, 356, 439, 467
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	3 cut(s)	179, 341, 462
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	52, 146, 241
TaaI	ACNGT	2 cut(s)	170, 176
TaiI	ACGT	1 cut(s)	141
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	17, 437
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	225, 350, 413
TspGWI	ACGGA	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	489
XceI	RCATGY	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	3 cut(s)	179, 341, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.