Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Reverse (-)

6416169 .. 6418693

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGCATTAACTACTTCAAGGGTTGTGCCAGTTCAGGTCCCCTGTAGAAAGCTCTCTTCACTTTTTGCTAATTTTTCTTGCCTTGAGTTAAGGAGATATCCTTGTAGAGGTCTTGTCTCCATTATGAACCATCCCAAATTGCTTCGTCCAGTGACTGCTTCTGTGCAGCCTCACGAGTTGTCGACTTTGGGGCATGAAGGCAACATTGTTCCTTCTAAAGAAATTCTTGATCTTTGGAGAAGTGTTGAAGCGGTATGTTTCGATGTGGACAGCACGGTTTGTGTGGATGAAGGTATTGATGAACTTGCTGAGTTTTGTGGAGCTGGAAAGGCTGTTGCTGAATGGACTGCCAGAGCTATGGGTGGATCTGTTCCATTTGAAGAAGCTCTAGCTGCAAGACTTTCTTTATTCAAGCCTTCTCTTTCAAAAGTAGAGGAATATCTCGACAAGAGACCCCCAAGGCTATCTCCTGGCATTGAAGAGTTGGTCAAGAAACTCAGAGCCAATAACATTGATGTCTATTTGATATCTGGAGGTTTTCGACAGATGATCAATCCTGTAGCATCGATTCTTGGCATCCCTCGGGAGAATATCTTTGCCAACAATCTTCTATTTGGAAACTCCGGCGAGTTTCTGGGATTTGATGAGAACGAACCTACGTCAAGAAGTGGAGGCAAAGCCAAGGCAGTGCAACAAATACGAAAGGGTCGTCTCTACAAGACTATGGCCATGATTGGAGATGGTGCTACTGATCTCGAAGCACGTAAACCTGGTGGCGCAGATTTGTTCATATGCTACGCTGGAGTTCAGCTTCGTGAAGCCGTTGCAGCAAATGCAGACTGGCTTATCTTTAAGTTTGAATCTCTCATAAACTCATTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

295

Amino Acids

32.32

Weight (kDa)

6.05

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	84 - 194	4.3e-13	haloacid dehalogenase-like hydrolase
HAD	PF12710	87 - 238	1.2e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	7 cut(s)	21, 251, 383, 415, 429, 482, 863
AjnI	CCWGG	2 cut(s)	472, 772
AluBI	AGCT	6 cut(s)	55, 326, 359, 389, 395, 814
AluI	AGCT	6 cut(s)	55, 326, 359, 389, 395, 814
Alw26I	GTCTC	3 cut(s)	124, 448, 719
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	1 cut(s)	729
ApeKI	GCWGC	3 cut(s)	169, 395, 830
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	731
BauI	CACGAG	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	181, 382, 842
BccI	CCATC	2 cut(s)	141, 737
BceAI	ACGGC	1 cut(s)	809
BciT130I	CCWGG	2 cut(s)	474, 774
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	124, 448, 719
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	2 cut(s)	46, 561
BisI	GCNGC	3 cut(s)	170, 396, 831
BlsI	GCNGC	3 cut(s)	171, 397, 832
Bme1390I	CCNGG	2 cut(s)	474, 774
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	474, 774
BmsI	GCATC	2 cut(s)	575, 588
BpmI	CTGGAG	2 cut(s)	555, 825
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	461, 584, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	32, 152, 848
BseBI	CCWGG	2 cut(s)	474, 774
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	3 cut(s)	461, 584, 684
BseGI	GGATG	3 cut(s)	133, 295, 579
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	303, 514
BseNI	ACTGG	3 cut(s)	32, 152, 848
BseXI	GCAGC	3 cut(s)	181, 382, 842
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	731
BshVI	ATCGAT	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	3 cut(s)	124, 448, 719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	731
Bso31I	GGTCTC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	585
Bsp143I	GATC	4 cut(s)	232, 368, 552, 754
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	731
BspCNI	CTCAG	2 cut(s)	304, 513
BspDI	ATCGAT	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	32, 152, 848
BssECI	CCNNGG	3 cut(s)	461, 584, 684
BssMI	GATC	4 cut(s)	232, 368, 552, 754
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	461, 684
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	474, 774
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	64, 477
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBAI	YACGTR	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	312, 500
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	133, 295, 579
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	4 cut(s)	235, 371, 555, 757
BstMAI	GTCTC	3 cut(s)	124, 448, 719
BstMBI	GATC	4 cut(s)	232, 368, 552, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 395, 830, 836
BstNI	CCWGG	2 cut(s)	474, 774
BstSCI	CCNGG	2 cut(s)	472, 772
BstSFI	CTRYAG	2 cut(s)	46, 561
BstV1I	GCAGC	3 cut(s)	181, 382, 842
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	731
BsuTUI	ATCGAT	1 cut(s)	569
BtsCI	GGATG	3 cut(s)	133, 295, 579
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	159, 696
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	569
CsiI	ACCWGGT	1 cut(s)	772
CviAII	CATG	2 cut(s)	197, 733
DdeI	CTNAG	2 cut(s)	312, 500
DpnI	GATC	4 cut(s)	234, 370, 554, 756
DpnII	GATC	4 cut(s)	232, 368, 552, 754
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	2 cut(s)	64, 477
EarI	CTCTTC	2 cut(s)	64, 477
Eco130I	CCWWGG	2 cut(s)	461, 684
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	2 cut(s)	101, 531
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	472, 772
EcoRV	GATATC	2 cut(s)	101, 531
EcoT14I	CCWWGG	2 cut(s)	461, 684
ErhI	CCWWGG	2 cut(s)	461, 684
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	2 cut(s)	200, 736
FaiI	YATR	9 cut(s)	128, 198, 259, 362, 728, 734, 794, 796, 872
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 391, 423
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	196, 732
FauNDI	CATATG	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	170, 396, 831
FokI	GGATG	3 cut(s)	120, 302, 566
Fsp4HI	GCNGC	3 cut(s)	170, 396, 831
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	3 cut(s)	170, 396, 831
GsuI	CTGGAG	2 cut(s)	555, 825
HaeIII	GGCC	1 cut(s)	731
HapII	CCGG	1 cut(s)	627
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	2 cut(s)	200, 736
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	571, 863
HpaII	CCGG	1 cut(s)	627
Hpy166II	GTNNAC	3 cut(s)	186, 271, 770
Hpy188I	TCNGA	1 cut(s)	503
Hpy188III	TCNNGA	9 cut(s)	176, 230, 446, 493, 534, 587, 666, 758, 818
Hpy8I	GTNNAC	3 cut(s)	186, 271, 770
HpyAV	CCTTC	4 cut(s)	194, 225, 287, 429
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	662, 766
HpyCH4V	TGCA	5 cut(s)	169, 398, 694, 830, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 395, 830, 836
HpyF3I	CTNAG	2 cut(s)	312, 500
HpySE526I	ACGT	2 cut(s)	662, 766
Hsp92II	CATG	2 cut(s)	200, 736
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	232, 368, 552, 754
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	3 cut(s)	181, 382, 842
LweI	GCATC	2 cut(s)	575, 588
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	662, 766
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	234, 370, 554, 756
MboI	GATC	4 cut(s)	232, 368, 552, 754
MboII	GAAGA	4 cut(s)	51, 395, 494, 602
MflI	RGATCY	1 cut(s)	368
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	3 cut(s)	73, 140, 225
MluNI	TGGCCA	1 cut(s)	731
MnlI	CCTC	6 cut(s)	104, 183, 430, 530, 594, 668
Mox20I	TGGCCA	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	3 cut(s)	11, 92, 855
Msp20I	TGGCCA	1 cut(s)	731
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	474, 774
MvaI	CCWGG	2 cut(s)	474, 774
MwoI	GCNNNNNNNGC	4 cut(s)	332, 395, 830, 836
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	4 cut(s)	232, 368, 552, 754
NlaIII	CATG	2 cut(s)	200, 736
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PfeI	GAWTC	2 cut(s)	571, 863
PkrI	GCNGC	3 cut(s)	171, 397, 832
Ppu21I	YACGTR	1 cut(s)	767
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	472, 772
PspGI	CCWGG	2 cut(s)	472, 772
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	11, 92, 855
SatI	GCNGC	3 cut(s)	170, 396, 831
Sau3AI	GATC	4 cut(s)	232, 368, 552, 754
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	474, 774
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	2 cut(s)	575, 588
SfcI	CTRYAG	2 cut(s)	46, 561
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	73, 140, 225
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	472, 772
StyI	CCWWGG	2 cut(s)	461, 684
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	665, 769
TaqI	TCGA	6 cut(s)	185, 264, 447, 544, 569, 759
TasI	AATT	3 cut(s)	73, 140, 225
TfiI	GAWTC	2 cut(s)	571, 863
Tru1I	TTAA	3 cut(s)	11, 92, 855
Tru9I	TTAA	3 cut(s)	11, 92, 855
TscAI	CASTG	2 cut(s)	159, 696
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	169, 395, 830
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	143, 213, 306, 318, 781
TspRI	CASTG	2 cut(s)	159, 696
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.