Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Reverse (-)

64853305 .. 64856061

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCATTTTGCTCTGTGTTTGCTTGCCCAGAAAATGTGAGGAAGAAAATAGTTCATATAATATTCATGGAAGGATTGGTGAATTCGTCTAGAATTACCGCCATTGGGACTCATTTTAGGCAAAAGAGCCGTGCTTTTGTTCCTACATCTTCAGCGCAATTCACCAAAAGTTTGTATAGATATAGAAATGTTGGGATAGAGAAGCACCACAGATCTCTCAAGCCAATTGCTGCTTCGATTCAACCAGTAGAAGCCTCCCCATCAAGCCGCTTTGGCAACATGCTACCTTCTAAAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTCTGCTTTGATGTGGATAGCACGGTTTGCCTGGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGTTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTATCTTTGTTTAATCCATCCCTGTCTCAAGTACAAGATTATCTTGAAAAGAGGCCCCCAAGGATTTCTCCGGGCATAGCCAAATTAGTCAAAAAGCTGAAAGCTAATGGAACCACAGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATAAAACCTGTTGCATCAATTCTTGGGATTCCGCCAGAAAACGTGTTTGCCAATCAACTACTTTTTGGAAGTAATGGAGAGTTTGTCGGCTTTGATGAAAATGAACCCACTTCAAGGAGTGGAGGAAAAGCCACTGCAGTGCAACGGATAAGGAAGGCTCATAATTACAAGGAATTAGTCATGATTGGGGATGGTGCGACTGATCTCGAGGCACGTCAACCTGGAGGTGCTGATTTGTTCATCTGCTATGCTGGTGTTCAACATCGGGAGGCTGTTGCAGCAAAGGCTGATTGGCTTGTTTTTAATTTCGAAGAGTTGATAAGTTCCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

320

Amino Acids

34.99

Weight (kDa)

8.47

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	108 - 279	1.2e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	111 - 278	1.4e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	4 cut(s)	99, 268, 326, 656
AcsI	RAATTY	2 cut(s)	82, 386
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	447, 507
AfiI	CCNNNNNNNGG	3 cut(s)	105, 364, 738
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	4 cut(s)	242, 521, 738, 884
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	357, 597, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	398, 571, 578
AluI	AGCT	3 cut(s)	398, 571, 578
Alw26I	GTCTC	2 cut(s)	504, 607
Ama87I	CYCGRG	1 cut(s)	830
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	3 cut(s)	230, 467, 902
ApoI	RAATTY	2 cut(s)	82, 386
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	91, 154
AsuII	TTCGAA	1 cut(s)	933
AvaI	CYCGRG	1 cut(s)	830
BbvI	GCAGC	3 cut(s)	217, 454, 914
BccI	CCATC	3 cut(s)	268, 499, 809
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	3 cut(s)	359, 599, 846
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	504, 607
BfaI	CTAG	2 cut(s)	90, 426
BfmI	CTRYAG	1 cut(s)	759
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	4 cut(s)	231, 268, 468, 903
BlsI	GCNGC	4 cut(s)	232, 269, 469, 904
Bme1390I	CCNGG	4 cut(s)	359, 546, 599, 846
BmeT110I	CYCGRG	1 cut(s)	830
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	2 cut(s)	530, 586
BmrFI	CCNGG	4 cut(s)	359, 546, 599, 846
BmsI	GCATC	2 cut(s)	313, 647
BpmI	CTGGAG	2 cut(s)	627, 867
Bpu14I	TTCGAA	1 cut(s)	933
BpuEI	CTTGAG	3 cut(s)	203, 323, 486
BpuMI	CCSGG	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	2 cut(s)	533, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 364, 738
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	359, 599, 846
BseDI	CCNNGG	2 cut(s)	533, 951
BseGI	GGATG	3 cut(s)	367, 491, 820
BseLI	CCNNNNNNNGG	3 cut(s)	105, 364, 738
BseMI	GCAATG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	217, 454, 914
BshFI	GGCC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	830
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	105, 364, 738
BsmAI	GTCTC	2 cut(s)	504, 607
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	607
BsoBI	CYCGRG	1 cut(s)	830
Bsp119I	TTCGAA	1 cut(s)	933
Bsp143I	GATC	2 cut(s)	212, 826
BspACI	CCGC	4 cut(s)	99, 268, 326, 656
BspANI	GGCC	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	530, 586
BspMAI	CTGCAG	1 cut(s)	763
BspT104I	TTCGAA	1 cut(s)	933
BspTNI	GGTCTC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	533, 951
BssMI	GATC	2 cut(s)	212, 826
BssT1I	CCWWGG	2 cut(s)	533, 951
Bst2UI	CCWGG	3 cut(s)	359, 599, 846
Bst4CI	ACNGT	2 cut(s)	352, 592
Bst6I	CTCTTC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	933
BstC8I	GCNNGC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	367, 491, 820
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	215, 829
BstMAI	GTCTC	2 cut(s)	504, 607
BstMBI	GATC	2 cut(s)	212, 826
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 354, 467, 902, 908
BstNI	CCWGG	3 cut(s)	359, 599, 846
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	4 cut(s)	357, 544, 597, 844
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	3 cut(s)	217, 454, 914
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	529
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	3 cut(s)	367, 491, 820
BtsI	GCAGTG	2 cut(s)	756, 768
BtsIMutI	CAGTG	2 cut(s)	756, 768
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	528
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	446, 506
CviAII	CATG	3 cut(s)	67, 280, 805
CviQI	GTAC	2 cut(s)	446, 506
DpnI	GATC	2 cut(s)	214, 828
DpnII	GATC	2 cut(s)	212, 826
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	533, 951
Eco31I	GGTCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	830
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	357, 597, 844
EcoT14I	CCWWGG	2 cut(s)	533, 951
ErhI	CCWWGG	2 cut(s)	533, 951
FaeI	CATG	3 cut(s)	70, 283, 808
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 501, 533
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	3 cut(s)	66, 279, 804
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	4 cut(s)	231, 268, 468, 903
FokI	GGATG	3 cut(s)	374, 478, 827
Fsp4HI	GCNGC	4 cut(s)	231, 268, 468, 903
FspBI	CTAG	2 cut(s)	90, 426
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	231, 268, 468, 903
GsuI	CTGGAG	2 cut(s)	627, 867
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	545
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	70, 283, 808
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	842
HindII	GTYRAC	1 cut(s)	842
HinfI	GANTC	3 cut(s)	109, 238, 652
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	2 cut(s)	91, 154
Hpy166II	GTNNAC	2 cut(s)	595, 842
Hpy188III	TCNNGA	7 cut(s)	90, 302, 518, 606, 805, 830, 890
Hpy8I	GTNNAC	2 cut(s)	595, 842
HpyAV	CCTTC	3 cut(s)	65, 297, 772
HpyCH4III	ACNGT	2 cut(s)	352, 592
HpyCH4IV	ACGT	2 cut(s)	666, 838
HpyCH4V	TGCA	6 cut(s)	383, 413, 638, 761, 766, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 354, 467, 902, 908
HpySE526I	ACGT	2 cut(s)	666, 838
Hsp92II	CATG	3 cut(s)	70, 283, 808
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	212, 826
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	217, 454, 914
LweI	GCATC	2 cut(s)	313, 647
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	2 cut(s)	90, 426
MaeII	ACGT	2 cut(s)	666, 838
MalI	GATC	2 cut(s)	214, 828
MboI	GATC	2 cut(s)	212, 826
MboII	GAAGA	3 cut(s)	55, 141, 947
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	486, 927
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	4 cut(s)	359, 546, 599, 846
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	3 cut(s)	359, 599, 846
MwoI	GCNNNNNNNGC	5 cut(s)	273, 354, 467, 902, 908
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	212, 826
NlaIII	CATG	3 cut(s)	70, 283, 808
NlaIV	GGNNCC	2 cut(s)	530, 586
NspI	RCATGY	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	933
OliI	CACNNNNGTG	1 cut(s)	761
PaeR7I	CTCGAG	1 cut(s)	830
PagI	TCATGA	1 cut(s)	804
PfeI	GAWTC	2 cut(s)	238, 652
PkrI	GCNGC	4 cut(s)	232, 269, 469, 904
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	357, 597, 844
PspGI	CCWGG	3 cut(s)	357, 597, 844
PspN4I	GGNNCC	2 cut(s)	530, 586
PspPI	GGNCC	1 cut(s)	528
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	2 cut(s)	447, 507
RsaNI	GTAC	2 cut(s)	446, 506
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	2 cut(s)	486, 927
SatI	GCNGC	4 cut(s)	231, 268, 468, 903
Sau3AI	GATC	2 cut(s)	212, 826
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	359, 546, 599, 846
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	313, 647
SfcI	CTRYAG	1 cut(s)	759
Sfr274I	CTCGAG	1 cut(s)	830
SfuI	TTCGAA	1 cut(s)	933
SlaI	CTCGAG	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	4 cut(s)	218, 302, 501, 830
SmoI	CTYRAG	4 cut(s)	218, 302, 501, 830
SsiI	CCGC	4 cut(s)	99, 268, 326, 656
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	90, 426
StyD4I	CCNGG	4 cut(s)	357, 544, 597, 844
StyI	CCWWGG	2 cut(s)	533, 951
TaaI	ACNGT	2 cut(s)	352, 592
TaiI	ACGT	2 cut(s)	669, 841
TaqI	TCGA	3 cut(s)	236, 831, 933
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	238, 652
Tru1I	TTAA	2 cut(s)	486, 927
Tru9I	TTAA	2 cut(s)	486, 927
TscAI	CASTG	2 cut(s)	763, 768
TseI	GCWGC	3 cut(s)	230, 467, 902
TspDTI	ATGAA	6 cut(s)	44, 55, 390, 735, 741, 853
TspGWI	ACGGA	2 cut(s)	605, 784
TspRI	CASTG	2 cut(s)	763, 768
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	82, 386
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XhoI	CTCGAG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	90, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.