Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Forward (+)

3871971 .. 3876146

Gene Structure 4176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTTATAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTCTGCTTTGATGTGGATAGCACGGTTTGCCTCGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGTTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTATCTTTGTTTAATCCATCCCTGTCTCAAGTACAAGATTATCTTGAAAAGAGGCCCCCAAGGATTTCTCCTGGCATCACCAAATTAGTCAACAAGCTGAAAGCTAATGGAACCACAGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATAAAACCTGTTGCATCAATTCTTGGGATTCTGCCAGAAAACGTGTTTGCCAATCAACTACTATTTGGAAGTAATGGAGAGTTTGTCGGCTTTGATGAAAATGAGCCCACTTCAAGGAGTGGAGGAAAAGCCACTGCAGTGCAACGGATAAGGAAGGCTCATAATTACAAGGAATTAGTCATGATTGGGGATGGTGCGACTGATCTCGAGGCACGTCAACCTGGAGGTGCTGATTTGTTCATCTGCTATGCTGGTGTTCAACATCGGGAGGCTGTTGCAGCAAAGGCTGATTGGCTTGTTTTTAATTTCGAAGAGTTGATAAGTTCCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

224

Amino Acids

24.44

Weight (kDa)

4.87

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	13 - 184	1.1e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	16 - 183	1.3e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	2 cut(s)	162, 222
AfiI	CCNNNNNNNGG	2 cut(s)	79, 453
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	236, 453, 599
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	3 cut(s)	259, 312, 559
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	113, 286, 293
AluI	AGCT	3 cut(s)	113, 286, 293
Alw26I	GTCTC	2 cut(s)	219, 322
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	182, 617
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	648
AvaI	CYCGRG	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	169, 629
BccI	CCATC	2 cut(s)	214, 524
BciT130I	CCWGG	3 cut(s)	261, 314, 561
BcoDI	GTCTC	2 cut(s)	219, 322
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	2 cut(s)	183, 618
BlsI	GCNGC	2 cut(s)	184, 619
Bme1390I	CCNGG	3 cut(s)	261, 314, 561
BmeT110I	CYCGRG	1 cut(s)	545
BmgBI	CACGTC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	245, 301
BmrFI	CCNGG	3 cut(s)	261, 314, 561
BmsI	GCATC	3 cut(s)	28, 273, 362
BpmI	CTGGAG	2 cut(s)	342, 582
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	38, 201
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	248, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 453
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	261, 314, 561
BseDI	CCNNGG	2 cut(s)	248, 666
BseGI	GGATG	2 cut(s)	206, 535
BseLI	CCNNNNNNNGG	2 cut(s)	79, 453
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	169, 629
BshFI	GGCC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	79, 453
BsmAI	GTCTC	2 cut(s)	219, 322
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	245, 301
BspMAI	CTGCAG	1 cut(s)	478
BspT104I	TTCGAA	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	248, 666
BssMI	GATC	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	248, 666
Bst2UI	CCWGG	3 cut(s)	261, 314, 561
Bst4CI	ACNGT	2 cut(s)	67, 307
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	648
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	206, 535
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	219, 322
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 182, 617, 623
BstNI	CCWGG	3 cut(s)	261, 314, 561
BstSCI	CCNGG	3 cut(s)	259, 312, 559
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	169, 629
BsuRI	GGCC	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	206, 535
BtsI	GCAGTG	2 cut(s)	471, 483
BtsIMutI	CAGTG	2 cut(s)	471, 483
CciI	TCATGA	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	161, 221
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	2 cut(s)	161, 221
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	248, 666
Eco24I	GRGCYC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	545
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	3 cut(s)	259, 312, 559
EcoT14I	CCWWGG	2 cut(s)	248, 666
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	248, 666
FaeI	CATG	1 cut(s)	523
FaiI	YATR	5 cut(s)	8, 25, 501, 521, 588
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	183, 618
FokI	GGATG	2 cut(s)	193, 542
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	183, 618
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	183, 618
GsuI	CTGGAG	2 cut(s)	342, 582
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	523
HincII	GTYRAC	2 cut(s)	280, 557
HindII	GTYRAC	2 cut(s)	280, 557
HinfI	GANTC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	280, 310, 557
Hpy188III	TCNNGA	6 cut(s)	17, 233, 321, 520, 545, 605
Hpy8I	GTNNAC	3 cut(s)	280, 310, 557
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	2 cut(s)	67, 307
HpyCH4IV	ACGT	2 cut(s)	381, 553
HpyCH4V	TGCA	6 cut(s)	98, 128, 353, 476, 481, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 182, 617, 623
HpySE526I	ACGT	2 cut(s)	381, 553
Hsp92II	CATG	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	169, 629
LweI	GCATC	3 cut(s)	28, 273, 362
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	2 cut(s)	381, 553
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	1 cut(s)	662
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	6 cut(s)	101, 272, 357, 502, 512, 643
MseI	TTAA	2 cut(s)	201, 642
MslI	CAYNNNNRTG	1 cut(s)	476
MspR9I	CCNGG	3 cut(s)	261, 314, 561
MvaI	CCWGG	3 cut(s)	261, 314, 561
MwoI	GCNNNNNNNGC	4 cut(s)	69, 182, 617, 623
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	2 cut(s)	245, 301
NspV	TTCGAA	1 cut(s)	648
OliI	CACNNNNGTG	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	184, 619
Psp6I	CCWGG	3 cut(s)	259, 312, 559
PspGI	CCWGG	3 cut(s)	259, 312, 559
PspN4I	GGNNCC	2 cut(s)	245, 301
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	2 cut(s)	162, 222
RsaNI	GTAC	2 cut(s)	161, 221
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	201, 642
SatI	GCNGC	2 cut(s)	183, 618
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	261, 314, 561
SduI	GDGCHC	1 cut(s)	447
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	3 cut(s)	28, 273, 362
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	545
SfuI	TTCGAA	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	3 cut(s)	17, 216, 545
SmoI	CTYRAG	3 cut(s)	17, 216, 545
Sse9I	AATT	6 cut(s)	101, 272, 357, 502, 512, 643
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	259, 312, 559
StyI	CCWWGG	2 cut(s)	248, 666
TaaI	ACNGT	2 cut(s)	67, 307
TaiI	ACGT	2 cut(s)	384, 556
TaqI	TCGA	3 cut(s)	75, 546, 648
TasI	AATT	6 cut(s)	101, 272, 357, 502, 512, 643
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	201, 642
Tru9I	TTAA	2 cut(s)	201, 642
TscAI	CASTG	2 cut(s)	478, 483
TseI	GCWGC	2 cut(s)	182, 617
TspDTI	ATGAA	3 cut(s)	105, 450, 568
TspGWI	ACGGA	2 cut(s)	320, 499
TspRI	CASTG	2 cut(s)	478, 483
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.