Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Reverse (-)

7811853 .. 7815224

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13840.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGGGTTGGTGAATTCGTCACGAATCACCACCATTGGGACTCATTATAAGCAAAAGAACCTTGCTTTTGTTCCTACATCTTCAGTGCAATTCGCCAGAAGTTTGTATAGAAATAGAAGTCATGTTGGGATAGAACCACAACAAAGAGCACTCAAGCCAATTGCTGCTTCGACTCAACCAGTAGAAGCCACCCCATCAAGCCGCTCTGGCAACATGCTGCCTTCTAAAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTGTGCTTTGATGTGGATAGCACGGTTTGCCTGGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGCTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTGTCTTTGTTCAATCCATCCCTGTCTCAACTACAAGATTATCTTGAAAAGAGACCCCCAAGGATTTCTCCTGGCATAGCCGAATTAGTCAACAAGCTGAAGGCTAATGGAACAACGGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATATATCCTGTTGCATTAATTCTTGGGATACCCTCGGAAAATGTGTTTGCCAATCAACTACTGTTTGGAAGTAATGGAGAGTTCATAGGCTTTGACGAAAATGAGCCCACTTCAAGGAGTGGGGGAAAAGCCACTGCAGTTCAACGGATAAGGAAGGCTCATAATTACAAGGAATTAGTCATGATTGGGGATGGTGCAACTGATCTCGAGGCTCGTCAACCTGGAGGTGCTGATTTGTTCATCTGCTATGCTGGTGTTCAGCATCGAGAGGCTGTCGCAGCAAAGGCTGATTGGCTTGTTTTTAATTTCGAAGAGTTGATAAGTGCCTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

299

Amino Acids

32.44

Weight (kDa)

5.56

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	87 - 258	1.5e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	90 - 257	4.6e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	2 cut(s)	205, 263
AcsI	RAATTY	2 cut(s)	16, 323
AcuI	CTGAAG	2 cut(s)	69, 530
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	39, 301, 675
AgsI	TTSAA	4 cut(s)	424, 458, 675, 704
AjnI	CCWGG	4 cut(s)	294, 481, 534, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	2 cut(s)	335, 508
AluI	AGCT	2 cut(s)	335, 508
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	441, 457, 544
Ama87I	CYCGRG	1 cut(s)	767
ApeKI	GCWGC	4 cut(s)	167, 220, 404, 839
ApoI	RAATTY	2 cut(s)	16, 323
AseI	ATTAAT	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	22, 25
AsuII	TTCGAA	1 cut(s)	870
AvaI	CYCGRG	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	154, 207, 391, 851
BccI	CCATC	3 cut(s)	205, 436, 746
BciT130I	CCWGG	4 cut(s)	296, 483, 536, 783
BciVI	GTATCC	1 cut(s)	582
BcoDI	GTCTC	3 cut(s)	441, 457, 544
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	696
BfuI	GTATCC	1 cut(s)	582
BglI	GCCNNNNNGGC	1 cut(s)	210
BisI	GCNGC	5 cut(s)	168, 205, 221, 405, 840
BlsI	GCNGC	5 cut(s)	169, 206, 222, 406, 841
Bme1390I	CCNGG	4 cut(s)	296, 483, 536, 783
BmeT110I	CYCGRG	1 cut(s)	767
BmrFI	CCNGG	4 cut(s)	296, 483, 536, 783
BmsI	GCATC	2 cut(s)	250, 832
BpmI	CTGGAG	2 cut(s)	564, 804
Bpu14I	TTCGAA	1 cut(s)	870
BpuEI	CTTGAG	2 cut(s)	140, 260
BsaI	GGTCTC	2 cut(s)	457, 544
BsaJI	CCNNGG	3 cut(s)	470, 594, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 301, 675
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	4 cut(s)	296, 483, 536, 783
BseDI	CCNNGG	3 cut(s)	470, 594, 888
BseGI	GGATG	3 cut(s)	304, 428, 757
BseLI	CCNNNNNNNGG	3 cut(s)	39, 301, 675
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	4 cut(s)	154, 207, 391, 851
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	39, 301, 675
BsmAI	GTCTC	3 cut(s)	441, 457, 544
BsmFI	GGGAC	1 cut(s)	55
Bso31I	GGTCTC	2 cut(s)	457, 544
BsoBI	CYCGRG	1 cut(s)	767
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	154, 669
Bsp143I	GATC	1 cut(s)	763
BspACI	CCGC	2 cut(s)	205, 263
BspHI	TCATGA	1 cut(s)	741
BspMAI	CTGCAG	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	870
BspTNI	GGTCTC	2 cut(s)	457, 544
BsrBI	CCGCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	470, 594, 888
BssMI	GATC	1 cut(s)	763
BssT1I	CCWWGG	2 cut(s)	470, 888
Bst2UI	CCWGG	4 cut(s)	296, 483, 536, 783
Bst4CI	ACNGT	3 cut(s)	289, 529, 624
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	870
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	304, 428, 757
BstKTI	GATC	1 cut(s)	766
BstMAI	GTCTC	3 cut(s)	441, 457, 544
BstMBI	GATC	1 cut(s)	763
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 291, 341, 404, 839, 845
BstNI	CCWGG	4 cut(s)	296, 483, 536, 783
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	294, 481, 534, 781
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	154, 207, 391, 851
BsuI	GTATCC	1 cut(s)	582
BtsCI	GGATG	3 cut(s)	304, 428, 757
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	93, 693
CciI	TCATGA	1 cut(s)	741
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	125, 217, 742
CviQI	GTAC	1 cut(s)	383
DpnI	GATC	1 cut(s)	765
DpnII	GATC	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	470, 888
Eco24I	GRGCYC	1 cut(s)	669
Eco31I	GGTCTC	2 cut(s)	457, 544
Eco57I	CTGAAG	2 cut(s)	69, 530
Eco88I	CYCGRG	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	294, 481, 534, 781
EcoT14I	CCWWGG	2 cut(s)	470, 888
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	470, 888
FaeI	CATG	3 cut(s)	128, 220, 745
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 438, 470
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	124, 216, 741
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	168, 205, 221, 405, 840
FokI	GGATG	3 cut(s)	311, 415, 764
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	168, 205, 221, 405, 840
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	5 cut(s)	168, 205, 221, 405, 840
GsuI	CTGGAG	2 cut(s)	564, 804
Hin1II	CATG	3 cut(s)	128, 220, 745
HincII	GTYRAC	2 cut(s)	502, 779
HindII	GTYRAC	2 cut(s)	502, 779
HinfI	GANTC	3 cut(s)	27, 43, 175
HphI	GGTGA	2 cut(s)	22, 25
Hpy166II	GTNNAC	3 cut(s)	502, 532, 779
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	7 cut(s)	24, 239, 455, 543, 742, 767, 827
Hpy8I	GTNNAC	3 cut(s)	502, 532, 779
HpyAV	CCTTC	3 cut(s)	234, 505, 709
HpyCH4III	ACNGT	3 cut(s)	289, 529, 624
HpyCH4V	TGCA	6 cut(s)	91, 320, 350, 575, 698, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 291, 341, 404, 839, 845
Hsp92II	CATG	3 cut(s)	128, 220, 745
Kzo9I	GATC	1 cut(s)	763
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	4 cut(s)	154, 207, 391, 851
LweI	GCATC	2 cut(s)	250, 832
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	765
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	1 cut(s)	763
MboII	GAAGA	2 cut(s)	75, 884
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	154, 669
MluCI	AATT	9 cut(s)	16, 92, 162, 323, 494, 579, 724, 734, 865
MlyI	GAGTC	2 cut(s)	37, 169
MnlI	CCTC	9 cut(s)	226, 295, 385, 388, 539, 604, 763, 779, 823
MseI	TTAA	2 cut(s)	578, 864
MspR9I	CCNGG	4 cut(s)	296, 483, 536, 783
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	4 cut(s)	296, 483, 536, 783
MwoI	GCNNNNNNNGC	6 cut(s)	210, 291, 341, 404, 839, 845
NdeII	GATC	1 cut(s)	763
NlaIII	CATG	3 cut(s)	128, 220, 745
NmuCI	GTSAC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	870
PaeR7I	CTCGAG	1 cut(s)	767
PagI	TCATGA	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	169, 206, 222, 406, 841
PleI	GAGTC	2 cut(s)	37, 169
PpsI	GAGTC	2 cut(s)	37, 169
PshBI	ATTAAT	1 cut(s)	578
PsiI	TTATAA	1 cut(s)	51
Psp6I	CCWGG	4 cut(s)	294, 481, 534, 781
PspGI	CCWGG	4 cut(s)	294, 481, 534, 781
PstI	CTGCAG	1 cut(s)	700
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	578, 864
SatI	GCNGC	5 cut(s)	168, 205, 221, 405, 840
Sau3AI	GATC	1 cut(s)	763
SchI	GAGTC	2 cut(s)	37, 169
ScrFI	CCNGG	4 cut(s)	296, 483, 536, 783
SduI	GDGCHC	2 cut(s)	154, 669
SetI	ASST	9 cut(s)	66, 237, 337, 388, 510, 537, 550, 784, 790
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	250, 832
SfcI	CTRYAG	1 cut(s)	696
Sfr274I	CTCGAG	1 cut(s)	767
SfuI	TTCGAA	1 cut(s)	870
SlaI	CTCGAG	1 cut(s)	767
SmlI	CTYRAG	3 cut(s)	155, 239, 767
SmoI	CTYRAG	3 cut(s)	155, 239, 767
Sse9I	AATT	9 cut(s)	16, 92, 162, 323, 494, 579, 724, 734, 865
SsiI	CCGC	2 cut(s)	205, 263
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	4 cut(s)	294, 481, 534, 781
StyI	CCWWGG	2 cut(s)	470, 888
TaaI	ACNGT	3 cut(s)	289, 529, 624
TaqI	TCGA	4 cut(s)	173, 768, 826, 870
TasI	AATT	9 cut(s)	16, 92, 162, 323, 494, 579, 724, 734, 865
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	578, 864
Tru9I	TTAA	2 cut(s)	578, 864
TscAI	CASTG	2 cut(s)	93, 700
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	4 cut(s)	167, 220, 404, 839
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	3 cut(s)	327, 634, 790
TspGWI	ACGGA	2 cut(s)	542, 721
TspRI	CASTG	2 cut(s)	93, 700
VspI	ATTAAT	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	16, 323
XceI	RCATGY	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.