Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Forward (+)

3708159 .. 3711524

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG055300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAGGATTGGTGAATTCGTCTAGAATTACCGCCATTGGGACTCATTTTAGGCAAAAGAGCCATGCTTTTGTTCCTACATCTTCAGCGCAATTCACCAAAAGTTTGTATAGAAATAGAAATATTGGGATAGAGCAGCACCACAGATCTCTCAAGCCAATTGCTGCTTCGATTCAACCAGTAGAAGCCTCCCCATCAAGCCGCTTTGGCAACATGCTACCTTCTAAAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTCTGCTTTGATGTGGATAGCACGGTTTGCCTGGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGTTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTATCTCTGTTCAATCCATCCCTGTCTCAAGTACAAGATTATCTTGAAAAGAGGCCCCCAAGGATTTCTCCTGGCATAGCCAAATTAGTCAACAAGCTGAAAGCTAATGGAACCACAGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATAAAACCTGTTGCATCAATTCTTGGGATTCCGCCAGAAAACGTGTTTGCCAATCAACTCCTATTTGGAAGTAATGGAGAGTTTGTCGGCTTTGATGAAAATGAGCCCACTTCAAGGAGTGGAGGAAAAGCCACTGCAGTGCAACGGATAAGGAAGGTCAGTCCATCATCTTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

245

Amino Acids

26.6

Weight (kDa)

9.01

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	86 - 196	3.5e-11	haloacid dehalogenase-like hydrolase
HAD	PF12710	89 - 235	3e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	4 cut(s)	33, 202, 260, 590
AcsI	RAATTY	2 cut(s)	16, 320
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	381, 441
AfiI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	176, 421, 455, 672
AjnI	CCWGG	3 cut(s)	291, 478, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	3 cut(s)	332, 505, 512
AluI	AGCT	3 cut(s)	332, 505, 512
Alw26I	GTCTC	2 cut(s)	438, 541
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	3 cut(s)	136, 164, 401
ApoI	RAATTY	2 cut(s)	16, 320
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	25, 88
BanII	GRGCYC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	148, 151, 388
BccI	CCATC	3 cut(s)	202, 433, 730
BciT130I	CCWGG	3 cut(s)	293, 480, 533
BcoDI	GTCTC	2 cut(s)	438, 541
BfaI	CTAG	2 cut(s)	24, 360
BfmI	CTRYAG	1 cut(s)	693
BglI	GCCNNNNNGGC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	4 cut(s)	137, 165, 202, 402
BlsI	GCNGC	4 cut(s)	138, 166, 203, 403
Bme1390I	CCNGG	3 cut(s)	293, 480, 533
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	464, 520
BmrFI	CCNGG	3 cut(s)	293, 480, 533
BmsI	GCATC	2 cut(s)	247, 581
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	3 cut(s)	137, 257, 420
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 298, 672
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	3 cut(s)	293, 480, 533
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	301, 425
BseLI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	148, 151, 388
BshFI	GGCC	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
BsmAI	GTCTC	2 cut(s)	438, 541
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	1 cut(s)	146
BspACI	CCGC	4 cut(s)	33, 202, 260, 590
BspANI	GGCC	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	464, 520
BspMAI	CTGCAG	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	3 cut(s)	293, 480, 533
Bst4CI	ACNGT	2 cut(s)	286, 526
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	301, 425
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	2 cut(s)	438, 541
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 288, 401
BstNI	CCWGG	3 cut(s)	293, 480, 533
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	291, 478, 531
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	148, 151, 388
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	301, 425
BtsI	GCAGTG	2 cut(s)	690, 702
BtsIMutI	CAGTG	2 cut(s)	690, 702
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	380, 440
CviAII	CATG	2 cut(s)	65, 214
CviQI	GTAC	2 cut(s)	380, 440
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	291, 478, 531
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	2 cut(s)	68, 217
FaiI	YATR	6 cut(s)	66, 111, 215, 244, 485, 732
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 435, 467
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	64, 213
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	4 cut(s)	137, 165, 202, 402
FokI	GGATG	2 cut(s)	308, 412
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	4 cut(s)	137, 165, 202, 402
FspBI	CTAG	2 cut(s)	24, 360
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	137, 165, 202, 402
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	463
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	68, 217
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	3 cut(s)	43, 172, 586
HphI	GGTGA	2 cut(s)	25, 88
Hpy166II	GTNNAC	2 cut(s)	499, 529
Hpy188III	TCNNGA	4 cut(s)	24, 236, 452, 540
Hpy8I	GTNNAC	2 cut(s)	499, 529
HpyAV	CCTTC	2 cut(s)	231, 706
HpyCH4III	ACNGT	2 cut(s)	286, 526
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	5 cut(s)	317, 347, 572, 695, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 288, 401
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	68, 217
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	3 cut(s)	148, 151, 388
LweI	GCATC	2 cut(s)	247, 581
MabI	ACCWGGT	1 cut(s)	531
MaeI	CTAG	2 cut(s)	24, 360
MaeII	ACGT	1 cut(s)	600
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	1 cut(s)	75
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	7 cut(s)	16, 27, 92, 159, 320, 491, 576
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	8 cut(s)	199, 223, 292, 382, 385, 453, 536, 674
MslI	CAYNNNNRTG	1 cut(s)	695
MspR9I	CCNGG	3 cut(s)	293, 480, 533
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	3 cut(s)	293, 480, 533
MwoI	GCNNNNNNNGC	3 cut(s)	207, 288, 401
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	68, 217
NlaIV	GGNNCC	2 cut(s)	464, 520
NspI	RCATGY	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	172, 586
PkrI	GCNGC	4 cut(s)	138, 166, 203, 403
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	291, 478, 531
PspGI	CCWGG	3 cut(s)	291, 478, 531
PspN4I	GGNNCC	2 cut(s)	464, 520
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	381, 441
RsaNI	GTAC	2 cut(s)	380, 440
RseI	CAYNNNNRTG	1 cut(s)	695
SatI	GCNGC	4 cut(s)	137, 165, 202, 402
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	3 cut(s)	293, 480, 533
SduI	GDGCHC	1 cut(s)	666
SexAI	ACCWGGT	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	247, 581
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	3 cut(s)	152, 236, 435
SmoI	CTYRAG	3 cut(s)	152, 236, 435
Sse9I	AATT	7 cut(s)	16, 27, 92, 159, 320, 491, 576
SsiI	CCGC	4 cut(s)	33, 202, 260, 590
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	24, 360
StyD4I	CCNGG	3 cut(s)	291, 478, 531
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	286, 526
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	1 cut(s)	170
TasI	AATT	7 cut(s)	16, 27, 92, 159, 320, 491, 576
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	172, 586
TscAI	CASTG	2 cut(s)	697, 702
TseI	GCWGC	3 cut(s)	136, 164, 401
TspDTI	ATGAA	2 cut(s)	324, 669
TspGWI	ACGGA	2 cut(s)	539, 718
TspRI	CASTG	2 cut(s)	697, 702
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	16, 320
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	2 cut(s)	24, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.