Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Forward (+)

16421647 .. 16424786

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGGATTGGTGGGTGTTTCACGAGTCACCCCAGTTCGTACTCATTTGAGGCAAAAGCACCTTCCTTTTGTTCCTACGTCTTCACTGAAATTTACGAAAAGTCTGTATAAAAATAGAACTAGAGTTGGAATGAACCAACATCCCAAATCACCCAACCCAATTGCTGCTTCAATTCAACCATTAGAAGCCTCCGTGTTGAGCCGCTTTGACAACACGCAACCATCCAAAGAGGTTCTCGATTTATGGAGAAATGCTGATGCGGTGTGCTTCGATGTGGATAGCACTGTTTGCCTGGATGAGGGCATTGATGAACTTGCAGAATACTGTGGAGCTGGAAAGGCTGTTGCAGAATGGACGGCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCTAGACTATCTTTGTTCAATCCTTCCCTATCTCAAGTCCAAGATTTTCTCGAAGAGAGGCCCGCAAGGCTTTCACCTGGCATAGATGAGTTAGTCAAGAAGCTGAAGGCTAATAACACTGATGTTTACCTGGTCTCTGGAGGCTTCCGTCAAATGATCAAACCTGTGGCATCGATTCTTGGGATAGCGCCTGAAAACGTCTTTGCAAATCAACTGCTATTTGGAACATCTGGAGAGTTTCTGGGTTTTGACAAAAATGAGCCCACTTCAAGGAGTGGTGGGAAAGCCACTGCAGTGCAACAAATAAGGAAGGCTCATAATTACAAGGAATTAATCATGATTGGGGATGGTGCGACTGATCTTGAGGCACGCCAACCGGGTGGTGCTGACTTGTTCATTTGCTATGCTGGTGTTCAACTTCGAGAGGCTGTAGCGGCAAAGGCCAATTGGCTTGTTTTTAATTTCGAAGACTTGATAAGCTCCTTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

299

Amino Acids

32.54

Weight (kDa)

5.9

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	205, 263, 468, 839
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	43, 384
AfiI	CCNNNNNNNGG	2 cut(s)	301, 675
AgsI	TTSAA	5 cut(s)	174, 179, 424, 675, 821
AjnI	CCWGG	3 cut(s)	294, 481, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	3 cut(s)	335, 508, 885
AluI	AGCT	3 cut(s)	335, 508, 885
Alw26I	GTCTC	1 cut(s)	544
AoxI	GGCC	2 cut(s)	464, 846
ApeKI	GCWGC	2 cut(s)	167, 404
ApoI	RAATTY	1 cut(s)	92
AseI	ATTAAT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	3 cut(s)	22, 144, 471
AsuII	TTCGAA	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	75, 879
BbvI	GCAGC	2 cut(s)	154, 391
BccI	CCATC	2 cut(s)	232, 746
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	296, 483, 536
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	783
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	3 cut(s)	123, 363, 408
BfmI	CTRYAG	2 cut(s)	696, 834
BfoI	RGCGCY	1 cut(s)	596
BglI	GCCNNNNNGGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	168, 205, 405, 840
BlsI	GCNGC	4 cut(s)	169, 206, 406, 841
Bme1390I	CCNGG	4 cut(s)	296, 483, 536, 783
BmgT120I	GGNCC	1 cut(s)	465
BmrFI	CCNGG	4 cut(s)	296, 483, 536, 783
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	250, 584
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	75, 879
BpmI	CTGGAG	2 cut(s)	564, 657
Bpu14I	TTCGAA	1 cut(s)	870
BpuEI	CTTGAG	2 cut(s)	423, 788
BpuMI	CCSGG	1 cut(s)	783
Bsa29I	ATCGAT	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	888
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 675
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	3 cut(s)	296, 483, 536
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	4 cut(s)	142, 224, 304, 757
BseLI	CCNNNNNNNGG	2 cut(s)	301, 675
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	154, 391
BshFI	GGCC	2 cut(s)	466, 848
BshVI	ATCGAT	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	782
BslI	CCNNNNNNNGG	2 cut(s)	301, 675
BsmAI	GTCTC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	466, 848
Bso31I	GGTCTC	1 cut(s)	544
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	2 cut(s)	561, 763
BspACI	CCGC	4 cut(s)	205, 263, 468, 839
BspANI	GGCC	2 cut(s)	466, 848
BspDI	ATCGAT	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	741
BspMAI	CTGCAG	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	2 cut(s)	561, 763
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	3 cut(s)	296, 483, 536
Bst4CI	ACNGT	2 cut(s)	289, 329
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	468, 775
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	142, 224, 304, 757
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	2 cut(s)	564, 766
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	561, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	291, 341, 404, 472, 839, 845
BstNI	CCWGG	3 cut(s)	296, 483, 536
BstSCI	CCNGG	4 cut(s)	294, 481, 534, 781
BstSFI	CTRYAG	2 cut(s)	696, 834
BstV1I	GCAGC	2 cut(s)	154, 391
BstV2I	GAAGAC	2 cut(s)	75, 879
BstXI	CCANNNNNNTGG	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	466, 848
BsuTUI	ATCGAT	1 cut(s)	578
BtsCI	GGATG	4 cut(s)	142, 224, 304, 757
BtsI	GCAGTG	2 cut(s)	693, 705
BtsIMutI	CAGTG	5 cut(s)	86, 285, 522, 693, 705
Cac8I	GCNNGC	2 cut(s)	468, 775
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	42, 383
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	2 cut(s)	42, 383
DpnI	GATC	2 cut(s)	563, 765
DpnII	GATC	2 cut(s)	561, 763
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	888
Eco24I	GRGCYC	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	530
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRII	CCWGG	3 cut(s)	294, 481, 534
EcoT14I	CCWWGG	1 cut(s)	888
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	1 cut(s)	745
FaiI	YATR	6 cut(s)	111, 247, 488, 723, 743, 810
FatI	CATG	1 cut(s)	741
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	168, 205, 405, 840
FokI	GGATG	4 cut(s)	129, 211, 311, 764
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	4 cut(s)	168, 205, 405, 840
FspBI	CTAG	3 cut(s)	123, 363, 408
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	4 cut(s)	168, 205, 405, 840
GsuI	CTGGAG	2 cut(s)	564, 657
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	466, 848
HapII	CCGG	1 cut(s)	782
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	2 cut(s)	27, 580
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	3 cut(s)	22, 144, 471
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188III	TCNNGA	9 cut(s)	24, 239, 455, 502, 543, 636, 742, 767, 827
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	4 cut(s)	74, 438, 505, 709
HpyCH4III	ACNGT	2 cut(s)	289, 329
HpyCH4IV	ACGT	2 cut(s)	80, 603
HpyCH4V	TGCA	5 cut(s)	320, 350, 611, 698, 703
HpyF10VI	GCNNNNNNNGC	6 cut(s)	291, 341, 404, 472, 839, 845
HpySE526I	ACGT	2 cut(s)	80, 603
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	561, 763
LmnI	GCTCC	2 cut(s)	332, 890
Lsp1109I	GCAGC	2 cut(s)	154, 391
LweI	GCATC	2 cut(s)	250, 584
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	3 cut(s)	123, 363, 408
MaeII	ACGT	2 cut(s)	80, 603
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	563, 765
MboI	GATC	2 cut(s)	561, 763
MboII	GAAGA	3 cut(s)	75, 470, 884
MfeI	CAATTG	2 cut(s)	162, 850
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	7 cut(s)	92, 162, 174, 724, 734, 850, 865
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	109
MseI	TTAA	2 cut(s)	737, 864
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	4 cut(s)	296, 483, 536, 783
MunI	CAATTG	2 cut(s)	162, 850
MvaI	CCWGG	3 cut(s)	296, 483, 536
MwoI	GCNNNNNNNGC	6 cut(s)	291, 341, 404, 472, 839, 845
NciI	CCSGG	1 cut(s)	783
NdeII	GATC	2 cut(s)	561, 763
NlaIII	CATG	1 cut(s)	745
NmuCI	GTSAC	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	870
OliI	CACNNNNGTG	1 cut(s)	698
PagI	TCATGA	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	169, 206, 406, 841
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	737
Psp6I	CCWGG	3 cut(s)	294, 481, 534
PspGI	CCWGG	3 cut(s)	294, 481, 534
PspPI	GGNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	43, 384
RsaNI	GTAC	2 cut(s)	42, 383
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	737, 864
SatI	GCNGC	4 cut(s)	168, 205, 405, 840
Sau3AI	GATC	2 cut(s)	561, 763
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	4 cut(s)	296, 483, 536, 783
SduI	GDGCHC	1 cut(s)	669
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	250, 584
SfcI	CTRYAG	2 cut(s)	696, 834
SfuI	TTCGAA	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	438, 767
SmoI	CTYRAG	2 cut(s)	438, 767
Sse9I	AATT	7 cut(s)	92, 162, 174, 724, 734, 850, 865
SsiI	CCGC	4 cut(s)	205, 263, 468, 839
SspMI	CTAG	3 cut(s)	123, 363, 408
StyD4I	CCNGG	4 cut(s)	294, 481, 534, 781
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	2 cut(s)	289, 329
TaiI	ACGT	2 cut(s)	83, 606
TaqI	TCGA	6 cut(s)	240, 273, 456, 578, 826, 870
TasI	AATT	7 cut(s)	92, 162, 174, 724, 734, 850, 865
TauI	GCSGC	2 cut(s)	207, 842
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	737, 864
Tru9I	TTAA	2 cut(s)	737, 864
TscAI	CASTG	5 cut(s)	93, 292, 529, 700, 705
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	167, 404
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	149, 327, 790
TspGWI	ACGGA	2 cut(s)	184, 542
TspRI	CASTG	5 cut(s)	93, 292, 529, 700, 705
VspI	ATTAAT	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	3 cut(s)	123, 363, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.