Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Forward (+)

3837704 .. 3841192

Gene Structure 3489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTACCTTCTAAAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTCTGCTTTGATGTGGATAGCACGGTTTGCCTCGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGTTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTATCTTTGTTTAATCCATCCCTGTCTCAAGTTCAAGATTATCTTGAAAAGAGGCCCCCAAGGATTTCTCCTGGCATCACCAAATTAGTCAACAAGCTGAAAGCTAATGGAACCACAGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATAAAACCTGTTGCATCAATTCTTGGGATTCCGCCAGAAAACGTGTTTGCCAATCAACTACTATTTGGAAGTAATGGAGAGTTTGTCGGCTTTGATGAAAATGAGCCCACTTCAAGGAGTGGAGGAAAAGCCACTGCAGTGCAACGGATAAGGAAGGCTCATAATTACAAGGAATTAGTCATGATTGGGGATGGTGCGACTGATCTCGAGGCACGTCAACCTGGAGGTGCTGATTTGTTCATCTGCTATGCTGGTGTTCAACATCGGGAGGCTGTTGCAGCAAAGGCTGATTGGCTTGTTTTTAATTTCGAAGAGTTGATAAGTTCCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

226

Amino Acids

24.59

Weight (kDa)

4.95

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	15 - 186	1.2e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	18 - 185	1.4e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	47, 377
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	85, 459
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	230, 242, 459, 605
AjiI	CACGTC	1 cut(s)	560
AjnI	CCWGG	3 cut(s)	265, 318, 565
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	119, 292, 299
AluI	AGCT	3 cut(s)	119, 292, 299
Alw26I	GTCTC	2 cut(s)	225, 328
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	188, 623
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	175, 635
BccI	CCATC	2 cut(s)	220, 530
BciT130I	CCWGG	3 cut(s)	267, 320, 567
BcoDI	GTCTC	2 cut(s)	225, 328
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	189, 624
BlsI	GCNGC	2 cut(s)	190, 625
Bme1390I	CCNGG	3 cut(s)	267, 320, 567
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	251, 307
BmrFI	CCNGG	3 cut(s)	267, 320, 567
BmsI	GCATC	3 cut(s)	34, 279, 368
BpmI	CTGGAG	2 cut(s)	348, 588
Bpu14I	TTCGAA	1 cut(s)	654
BpuEI	CTTGAG	2 cut(s)	44, 207
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	254, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 459
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	3 cut(s)	267, 320, 567
BseDI	CCNNGG	2 cut(s)	254, 672
BseGI	GGATG	2 cut(s)	212, 541
BseLI	CCNNNNNNNGG	2 cut(s)	85, 459
BseMI	GCAATG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	175, 635
BshFI	GGCC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	85, 459
BsmAI	GTCTC	2 cut(s)	225, 328
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	2 cut(s)	47, 377
BspANI	GGCC	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	251, 307
BspMAI	CTGCAG	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	654
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	254, 672
BssMI	GATC	1 cut(s)	547
BssT1I	CCWWGG	2 cut(s)	254, 672
Bst2UI	CCWGG	3 cut(s)	267, 320, 567
Bst4CI	ACNGT	2 cut(s)	73, 313
Bst6I	CTCTTC	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	212, 541
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	2 cut(s)	225, 328
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 188, 623, 629
BstNI	CCWGG	3 cut(s)	267, 320, 567
BstSCI	CCNGG	3 cut(s)	265, 318, 565
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	175, 635
BsuRI	GGCC	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	212, 541
BtsI	GCAGTG	2 cut(s)	477, 489
BtsIMutI	CAGTG	2 cut(s)	477, 489
CciI	TCATGA	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	249
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	254, 672
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	265, 318, 565
EcoT14I	CCWWGG	2 cut(s)	254, 672
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	254, 672
FaeI	CATG	1 cut(s)	529
FaiI	YATR	4 cut(s)	31, 507, 527, 594
FalI	AAGNNNNNCTT	3 cut(s)	38, 222, 254
FatI	CATG	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	189, 624
FokI	GGATG	2 cut(s)	199, 548
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	189, 624
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	189, 624
GsuI	CTGGAG	2 cut(s)	348, 588
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	529
HincII	GTYRAC	2 cut(s)	286, 563
HindII	GTYRAC	2 cut(s)	286, 563
HinfI	GANTC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	286, 316, 563
Hpy188III	TCNNGA	7 cut(s)	23, 230, 239, 327, 526, 551, 611
Hpy8I	GTNNAC	3 cut(s)	286, 316, 563
HpyAV	CCTTC	2 cut(s)	18, 493
HpyCH4III	ACNGT	2 cut(s)	73, 313
HpyCH4IV	ACGT	2 cut(s)	387, 559
HpyCH4V	TGCA	6 cut(s)	104, 134, 359, 482, 487, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 188, 623, 629
HpySE526I	ACGT	2 cut(s)	387, 559
Hsp92II	CATG	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	2 cut(s)	175, 635
LweI	GCATC	3 cut(s)	34, 279, 368
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	387, 559
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	1 cut(s)	668
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	6 cut(s)	107, 278, 363, 508, 518, 649
MseI	TTAA	2 cut(s)	207, 648
MslI	CAYNNNNRTG	1 cut(s)	482
MspR9I	CCNGG	3 cut(s)	267, 320, 567
MvaI	CCWGG	3 cut(s)	267, 320, 567
MwoI	GCNNNNNNNGC	4 cut(s)	75, 188, 623, 629
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	2 cut(s)	251, 307
NspV	TTCGAA	1 cut(s)	654
OliI	CACNNNNGTG	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	190, 625
Psp6I	CCWGG	3 cut(s)	265, 318, 565
PspGI	CCWGG	3 cut(s)	265, 318, 565
PspN4I	GGNNCC	2 cut(s)	251, 307
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	207, 648
SatI	GCNGC	2 cut(s)	189, 624
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	1 cut(s)	249
ScrFI	CCNGG	3 cut(s)	267, 320, 567
SduI	GDGCHC	1 cut(s)	453
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	34, 279, 368
SfcI	CTRYAG	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	3 cut(s)	23, 222, 551
SmoI	CTYRAG	3 cut(s)	23, 222, 551
Sse9I	AATT	6 cut(s)	107, 278, 363, 508, 518, 649
SsiI	CCGC	2 cut(s)	47, 377
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	265, 318, 565
StyI	CCWWGG	2 cut(s)	254, 672
TaaI	ACNGT	2 cut(s)	73, 313
TaiI	ACGT	2 cut(s)	390, 562
TaqI	TCGA	3 cut(s)	81, 552, 654
TasI	AATT	6 cut(s)	107, 278, 363, 508, 518, 649
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	207, 648
Tru9I	TTAA	2 cut(s)	207, 648
TscAI	CASTG	2 cut(s)	484, 489
TseI	GCWGC	2 cut(s)	188, 623
TspDTI	ATGAA	3 cut(s)	111, 456, 574
TspGWI	ACGGA	2 cut(s)	326, 505
TspRI	CASTG	2 cut(s)	484, 489
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.