Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005439

Physical Location & Seq

Genomic Coordinates Reverse (-)

58181347 .. 58183276

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0452900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGGTTCCATCTCCCACACATCTTTGCTTTTCTCACTTTCACACTGGTGGTAAGCCATGCTGCTCTATCACCTCAACTTTACTGGAATTCTGTCTTGCCAAACACACGGATGCCAAAAACTCTCAGTGAACTTCTGCAATCTGACTTCAGCGAAGAAAAGAGCACCTCAGTTGGGGTAGGGAAGGGTGGTGTGAACGTTAACGCAGGTAAAGGAAAGCCCGCAGGCACCAACGTCAATGTTGGGAAGGGTGGTGTTCATGTTAACACTGGAAAAGGAAAGCCTGGAGGAACCAATGTGAATGTTGGAAAGGGTGGTGTGAATGTGCATGCTCCAAAAGGAAAGCCAGGGGGTGGTACCAATGTCAACGTAGGGGGAAAAGGTGGTGTTGGAGTGCAGACTGGAAAGCCCGGCAAGGGAACCAACGTGGGTGTTGGCAAAGGAGGAGTGCATGTAAGCACAGGTCACAAGGGAAAACCTGTATATGTTGGCGTAACACCAGGCAAAAGCCCATTTGTATACAACTATGCTGCTACTGAGACTCAACTTCATGAAGATCCACAGATCGTACTTTTCTTCTTGGAGAAGGACATGCATCCTGGCACAAAGATGAACTTGCGCTTCACTAAAAGTTCAGACACAGCAACTTTCCTTCCACGCAAAACTGCAGAGTCGATCCCTTTCTCATCTAATAAACTGCCCGAAATTTTGGACCAGTTTTCAGTGAAACCAGAATCTGCAGAAGCAGACACAATTAAGCAAACCATTGAAGAGTGTGAGAAACCAGGTATTAGAGGAGAGGAAAAATATTGTGCAACCTCTTTGGAGTCAATGATTGACTTCAGCACTTCCAAGCTTGGAAGGAACATTCAGGCAGTCTCAACAGAGGTTGAAAAGGGAACCACCATGCAGAAGTACACAATATTGCCTGGAGTGAAGAAGCTGGCAGGCGACAAATCCATTGCATGCCATAAGCAGAACTATGTGTATGCTGTCTTCTACTGCCATGCAACAACAACCACAAGAGCTTATATAGTGCCGCTGGAAGGTGCTGATGGAGTGAACGCTAAGGCAGTAGCAGTCTGCCACACAGACACCTCAGAATGGAACCCAAAGCATTTGGCCTTCCAAGTTCTCAAAGTTAAGCCAGGAACCATTCCCATCTGCCATTTTCTTCCCAGTGATCATATTGTCTGGGTTCCAAACCAGAAATCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

HAD Hydrolase

Protein Analysis

406

Amino Acids

43.19

Weight (kDa)

9.34

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	191 - 401	4.7e-91	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18640 AT1G18640
fragaria_vesca	FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840 FvH4_5g13840
malus_domestica	MD06G1202500.v1.1 MD14G1211600.v1.1
prunus_persica	Prupe.5G205100_v2.0.a1
pyrus_communis	pycom06g17850 pycom14g17520
rosa_chinensis	RchiOBHm_Chr7g0183091
rosa_laevigata	RLG00000005079
rosa_multiflora	Rmu_sc0012218.1_g000001 Rmu_ssc0000111.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270770
rosa_rugosa	Rorug06G0452700 Rorug06G0452800 Rorug06G0452800 Rorug06G0452900
rosa_samantha	Rh7AG056000 Rh7BG055300 Rh7CG056800 Rh7DG055500
rosa_wichuraiana	Rw7G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	227, 356
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	2 cut(s)	222, 1040
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	551, 670
AcsI	RAATTY	2 cut(s)	88, 705
AcuI	CTGAAG	2 cut(s)	133, 826
AfaI	GTAC	3 cut(s)	358, 570, 917
AfiI	CCNNNNNNNGG	5 cut(s)	174, 353, 416, 1046, 1104
AgsI	TTSAA	2 cut(s)	770, 893
AjnI	CCWGG	7 cut(s)	283, 346, 499, 598, 784, 928, 1147
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	3 cut(s)	856, 943, 1028
AluI	AGCT	3 cut(s)	856, 943, 1028
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	533, 883
AlwI	GGATC	2 cut(s)	551, 670
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	1122
ApeKI	GCWGC	2 cut(s)	62, 530
ApoI	RAATTY	2 cut(s)	88, 705
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BanI	GGYRCC	2 cut(s)	227, 356
BarI	GAAGNNNNNNTAC	2 cut(s)	980, 1012
BbsI	GAAGAC	1 cut(s)	988
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	49, 517
BccI	CCATC	3 cut(s)	18, 1049, 1169
BciT130I	CCWGG	7 cut(s)	285, 348, 501, 600, 786, 930, 1149
BclI	TGATCA	1 cut(s)	1183
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	533, 883
BfmI	CTRYAG	2 cut(s)	666, 738
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	63, 531, 1040
BlsI	GCNGC	3 cut(s)	64, 532, 1041
Bme1390I	CCNGG	8 cut(s)	285, 348, 411, 501, 600, 786, 930, 1149
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	9 cut(s)	8, 229, 292, 358, 421, 901, 1109, 1153, 1200
BmrFI	CCNGG	8 cut(s)	285, 348, 411, 501, 600, 786, 930, 1149
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	2 cut(s)	102, 604
BmuI	ACTGGG	1 cut(s)	1173
BpiI	GAAGAC	1 cut(s)	988
BpmI	CTGGAG	2 cut(s)	306, 951
Bpu10I	CCTNAGC	1 cut(s)	1068
BpuMI	CCSGG	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	5 cut(s)	174, 353, 416, 1046, 1104
Bse1I	ACTGG	6 cut(s)	51, 89, 274, 406, 715, 1179
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	7 cut(s)	285, 348, 501, 600, 786, 930, 1149
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	117, 595
BseLI	CCNNNNNNNGG	5 cut(s)	174, 353, 416, 1046, 1104
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	139, 183, 528, 1113
BseNI	ACTGG	6 cut(s)	51, 89, 274, 406, 715, 1179
BseRI	GAGGAG	2 cut(s)	459, 810
BseXI	GCAGC	2 cut(s)	49, 517
BsgI	GTGCAG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	1124
BshNI	GGYRCC	2 cut(s)	227, 356
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	5 cut(s)	174, 353, 416, 1046, 1104
BsmAI	GTCTC	2 cut(s)	533, 883
BsnI	GGCC	1 cut(s)	1124
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	556, 564, 675, 1183
BspACI	CCGC	2 cut(s)	222, 1040
BspANI	GGCC	1 cut(s)	1124
BspCNI	CTCAG	4 cut(s)	138, 182, 529, 1112
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	9 cut(s)	8, 229, 292, 358, 421, 901, 1109, 1153, 1200
BspMAI	CTGCAG	2 cut(s)	670, 742
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	551, 670
BspT107I	GGYRCC	2 cut(s)	227, 356
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	6 cut(s)	51, 89, 274, 406, 715, 1179
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	556, 564, 675, 1183
BssNAI	GTATAC	1 cut(s)	520
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	7 cut(s)	285, 348, 501, 600, 786, 930, 1149
Bst6I	CTCTTC	1 cut(s)	765
BstC8I	GCNNGC	6 cut(s)	222, 226, 330, 945, 949, 967
BstDEI	CTNAG	5 cut(s)	125, 169, 537, 1068, 1099
BstF5I	GGATG	2 cut(s)	117, 595
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	4 cut(s)	559, 567, 678, 1186
BstMAI	GTCTC	2 cut(s)	533, 883
BstMBI	GATC	4 cut(s)	556, 564, 675, 1183
BstNI	CCWGG	7 cut(s)	285, 348, 501, 600, 786, 930, 1149
BstNSI	RCATGY	4 cut(s)	332, 455, 595, 969
BstSCI	CCNGG	8 cut(s)	283, 346, 409, 499, 598, 784, 928, 1147
BstSFI	CTRYAG	2 cut(s)	666, 738
BstV1I	GCAGC	2 cut(s)	49, 517
BstV2I	GAAGAC	1 cut(s)	988
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	1124
BtsCI	GGATG	2 cut(s)	117, 595
BtsIMutI	CAGTG	5 cut(s)	44, 133, 267, 729, 1186
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	6 cut(s)	222, 226, 330, 945, 949, 967
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	712
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	357, 569, 916
CviAII	CATG	9 cut(s)	59, 260, 329, 452, 551, 592, 907, 966, 1007
CviQI	GTAC	3 cut(s)	357, 569, 916
DdeI	CTNAG	5 cut(s)	125, 169, 537, 1068, 1099
DpnI	GATC	4 cut(s)	558, 566, 677, 1185
DpnII	GATC	4 cut(s)	556, 564, 675, 1183
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	133, 826
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	7 cut(s)	283, 346, 499, 598, 784, 928, 1147
EcoT22I	ATGCAT	1 cut(s)	597
FaeI	CATG	9 cut(s)	62, 263, 332, 455, 554, 595, 910, 969, 1010
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FatI	CATG	9 cut(s)	58, 259, 328, 451, 550, 591, 906, 965, 1006
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	1183
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	63, 531, 1040
FokI	GGATG	2 cut(s)	124, 582
Fsp4HI	GCNGC	3 cut(s)	63, 531, 1040
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	3 cut(s)	63, 531, 1040
GsuI	CTGGAG	2 cut(s)	306, 951
HaeIII	GGCC	1 cut(s)	1124
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	9 cut(s)	62, 263, 332, 455, 554, 595, 910, 969, 1010
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	3 cut(s)	202, 265, 367
HindII	GTYRAC	3 cut(s)	202, 265, 367
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	541, 671, 734, 827
HpaI	GTTAAC	2 cut(s)	202, 265
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	8 cut(s)	131, 196, 202, 265, 367, 520, 918, 1063
Hpy188I	TCNGA	3 cut(s)	145, 637, 1102
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	8 cut(s)	131, 196, 202, 265, 367, 520, 918, 1063
HpyAV	CCTTC	7 cut(s)	178, 241, 580, 662, 855, 1040, 1135
HpyCH4IV	ACGT	4 cut(s)	198, 234, 369, 426
HpyF3I	CTNAG	5 cut(s)	125, 169, 537, 1068, 1099
HpySE526I	ACGT	4 cut(s)	198, 234, 369, 426
Hsp92II	CATG	9 cut(s)	62, 263, 332, 455, 554, 595, 910, 969, 1010
HspAI	GCGC	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	1183
KspAI	GTTAAC	2 cut(s)	202, 265
Kzo9I	GATC	4 cut(s)	556, 564, 675, 1183
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	49, 517
LweI	GCATC	2 cut(s)	102, 604
MabI	ACCWGGT	1 cut(s)	784
MaeII	ACGT	4 cut(s)	198, 234, 369, 426
MaeIII	GTNAC	2 cut(s)	464, 493
MalI	GATC	4 cut(s)	558, 566, 677, 1185
MboI	GATC	4 cut(s)	556, 564, 675, 1183
MboII	GAAGA	7 cut(s)	167, 566, 568, 782, 949, 988, 1166
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	88, 705, 753
MlyI	GAGTC	3 cut(s)	535, 680, 836
MmeI	TCCRAC	2 cut(s)	286, 370
MnlI	CCTC	9 cut(s)	84, 178, 281, 437, 788, 793, 829, 880, 1108
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	4 cut(s)	201, 264, 756, 1143
MslI	CAYNNNNRTG	3 cut(s)	47, 110, 608
MspA1I	CMGCKG	1 cut(s)	1042
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	8 cut(s)	285, 348, 411, 501, 600, 786, 930, 1149
MvaI	CCWGG	7 cut(s)	285, 348, 501, 600, 786, 930, 1149
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	556, 564, 675, 1183
NlaIII	CATG	9 cut(s)	62, 263, 332, 455, 554, 595, 910, 969, 1010
NlaIV	GGNNCC	9 cut(s)	8, 229, 292, 358, 421, 901, 1109, 1153, 1200
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	4 cut(s)	332, 455, 595, 969
OliI	CACNNNNGTG	1 cut(s)	47
PaeI	GCATGC	2 cut(s)	332, 969
PagI	TCATGA	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	734
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	64, 532, 1041
PleI	GAGTC	3 cut(s)	535, 679, 835
PpsI	GAGTC	3 cut(s)	535, 679, 835
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	7 cut(s)	283, 346, 499, 598, 784, 928, 1147
PspGI	CCWGG	7 cut(s)	283, 346, 499, 598, 784, 928, 1147
PspN4I	GGNNCC	9 cut(s)	8, 229, 292, 358, 421, 901, 1109, 1153, 1200
PspPI	GGNCC	1 cut(s)	712
PstI	CTGCAG	2 cut(s)	670, 742
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	3 cut(s)	358, 570, 917
RsaNI	GTAC	3 cut(s)	357, 569, 916
RseI	CAYNNNNRTG	3 cut(s)	47, 110, 608
SaqAI	TTAA	4 cut(s)	201, 264, 756, 1143
SatI	GCNGC	3 cut(s)	63, 531, 1040
Sau3AI	GATC	4 cut(s)	556, 564, 675, 1183
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	3 cut(s)	535, 680, 836
ScrFI	CCNGG	8 cut(s)	285, 348, 411, 501, 600, 786, 930, 1149
SduI	GDGCHC	1 cut(s)	167
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	102, 604
SfcI	CTRYAG	2 cut(s)	666, 738
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	3 cut(s)	47, 110, 608
SphI	GCATGC	2 cut(s)	332, 969
Sse9I	AATT	3 cut(s)	88, 705, 753
SsiI	CCGC	2 cut(s)	222, 1040
SspI	AATATT	2 cut(s)	809, 924
StyD4I	CCNGG	8 cut(s)	283, 346, 409, 499, 598, 784, 928, 1147
TaiI	ACGT	4 cut(s)	201, 237, 372, 429
TaqI	TCGA	1 cut(s)	674
TasI	AATT	3 cut(s)	88, 705, 753
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	1042
TfiI	GAWTC	1 cut(s)	734
Tru1I	TTAA	4 cut(s)	201, 264, 756, 1143
Tru9I	TTAA	4 cut(s)	201, 264, 756, 1143
TscAI	CASTG	5 cut(s)	51, 133, 274, 729, 1186
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	62, 530
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	4 cut(s)	248, 539, 567, 626
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	5 cut(s)	51, 133, 274, 729, 1186
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	2 cut(s)	88, 705
XceI	RCATGY	4 cut(s)	332, 455, 595, 969
XmiI	GTMKAC	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.