AT1G19440

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010704
Physical Location & Seq
Forward (+)
6728747 .. 6730931
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19440.1

Sequence Viewer

Length: 1551 bp
ATGGACGGTGCCGGAGAATCACGACTCGGTGGTGATGGTGGTGGTGATGGTTCTGTTGGAGTTCAGATCCGACAAACACGGATGCTACCGGATTTTCTCCAGAGCGTGAATCTCAAGTATGTGAAATTAGGTTACCATTACTTAATCTCAAATCTCTTGACTCTCTGTTTATTCCCTCTCGCCGTTGTTATCTCCGTCGAAGCCTCTCAGATGAACCCAGATGATCTCAAACAGCTCTGGATCCATCTACAATACAATCTGGTTAGTATCATCATCTGTTCAGCGATTCTAGTCTTCGGGTTAACGGTTTATGTTATGACCCGACCTAGACCCGTTTACTTGGTTGATTTCTCTTGTTATCTCCCACCTGATCATCTCAAAGCTCCTTACGCTCGGTTCATGGAACATTCTAGACTCACCGGAGATTTCGATGACTCTGCTCTCGAGTTTCAACGCAAGATCCTTGAGCGTTCTGGTTTAGGGGAAGACACTTATGTCCCTGAAGCTATGCATTATGTTCCACCGAGAATTTCAATGGCTGCTGCTAGAGAAGAAGCTGAACAAGTCATGTTTGGTGCTTTAGATAACCTTTTCGCTAACACTAATGTGAAACCAAAGGATATTGGAATCCTTGTTGTGAATTGTAGTCTCTTTAATCCAACTCCTTCGTTATCTGCAATGATTGTGAACAAGTATAAGCTTAGAGGTAACATTAGAAGCTACAATCTAGGCGGTATGGGTTGCAGCGCGGGAGTTATCGCTGTGGATCTTGCTAAAGACATGTTGTTGGTACATAGGAACACTTATGCGGTTGTTGTTTCTACTGAGAACATTACTCAGAATTGGTATTTTGGTAACAAGAAATCGATGTTGATACCGAACTGCTTGTTTCGAGTTGGTGGCTCTGCGGTTTTGCTATCGAACAAGTCGAGGGACAAGAGACGGTCTAAGTACAGGCTTGTACATGTAGTCAGGACTCACCGTGGAGCAGATGATAAAGCTTTCCGTTGTGTTTATCAAGAGCAGGATGATACAGGGAGAACCGGGGTTTCGTTGTCGAAAGATCTAATGGCGATTGCAGGGGAAACTCTCAAAACCAATATCACTACATTGGGTCCTCTTGTTCTACCGATAAGTGAGCAGATTCTCTTCTTTATGACTCTAGTTGTGAAGAAGCTCTTTAACGGTAAAGTGAAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCATTTCTGTATCCATGCTGGTGGAAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATGTCGAGGCTTCGAGGATGACTCTTCATCGATTTGGTAACACATCTTCGAGCTCCATTTGGTATGAATTGGCTTACATTGAAGCGAAGGGAAGGATGCGAAGAGGTAATCGTGTTTGGCAAATCGCGTTCGGAAGTGGATTTAAATGTAATAGCGCGATTTGGGAAGCATTAAGGCATGTGAAACCTTCGAACAACAGTCCTTGGGAAGATTGTATTGACAAGTATCCGGTAACTTTAAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

516

Amino Acids

57.84

Weight (kDa)

9.03

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 104 - 393 1.2e-144 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 410 - 490 4.6e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 412 - 482 1e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 3 cut(s) 749, 1430, 1460
AciI CCGC 4 cut(s) 732, 749, 809, 908
AclWI GGATC 5 cut(s) 61, 235, 248, 454, 774
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 792, 953, 963
AflIII ACRYGT 2 cut(s) 780, 964
AgsI TTSAA 4 cut(s) 452, 534, 1216, 1385
AleI CACNNNNGTG 1 cut(s) 605
Alw21I GWGCWC 1 cut(s) 1358
Alw26I GTCTC 2 cut(s) 653, 934
AlwI GGATC 5 cut(s) 61, 235, 248, 454, 774
Ama87I CYCGRG 1 cut(s) 443
ApeKI GCWGC 4 cut(s) 539, 542, 744, 1288
ApoI RAATTY 1 cut(s) 528
AspLEI GCGC 2 cut(s) 749, 1460
AspS9I GGNCC 1 cut(s) 1115
AsuC2I CCSGG 2 cut(s) 1045, 1208
AsuHPI GGTGA 5 cut(s) 44, 56, 409, 971, 1287
AsuII TTCGAA 1 cut(s) 1493
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 1115
BamHI GGATCC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 1358
BarI GAAGNNNNNNTAC 2 cut(s) 1333, 1365
BbsI GAAGAC 2 cut(s) 286, 492
Bbv12I GWGCWC 1 cut(s) 1358
BbvI GCAGC 4 cut(s) 526, 529, 756, 1300
BccI CCATC 3 cut(s) 29, 41, 252
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciVI GTATCC 2 cut(s) 1250, 1539
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 2 cut(s) 1045, 1208
BcoDI GTCTC 2 cut(s) 653, 934
BfaI CTAG 6 cut(s) 290, 327, 411, 546, 728, 1163
BfmI CTRYAG 1 cut(s) 1286
BfuI GTATCC 2 cut(s) 1250, 1539
BglII AGATCT 1 cut(s) 1063
BisI GCNGC 4 cut(s) 540, 543, 745, 1289
BlsI GCNGC 4 cut(s) 541, 544, 746, 1290
Bme1390I CCNGG 2 cut(s) 1045, 1208
Bme18I GGWCC 1 cut(s) 1115
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 1115
BmiI GGNNCC 3 cut(s) 10, 242, 1116
BmrFI CCNGG 2 cut(s) 1045, 1208
BmsI GCATC 2 cut(s) 72, 1389
BpiI GAAGAC 2 cut(s) 286, 492
BplI GAGNNNNNCTC 2 cut(s) 1309, 1341
BpmI CTGGAG 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 1493
BpuEI CTTGAG 2 cut(s) 98, 485
BpuMI CCSGG 2 cut(s) 1045, 1208
Bsa29I ATCGAT 3 cut(s) 866, 1266, 1333
BsaJI CCNNGG 3 cut(s) 982, 1044, 1505
BsaWI WCCGGW 3 cut(s) 88, 419, 1531
Bse1I ACTGG 1 cut(s) 1298
Bse3DI GCAATG 1 cut(s) 684
BseCI ATCGAT 3 cut(s) 866, 1266, 1333
BseDI CCNNGG 3 cut(s) 982, 1044, 1505
BseGI GGATG 4 cut(s) 87, 1033, 1326, 1404
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 3 cut(s) 221, 816, 851
BseNI ACTGG 1 cut(s) 1298
BseXI GCAGC 4 cut(s) 526, 529, 756, 1300
Bsh1236I CGCG 3 cut(s) 749, 1430, 1460
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 3 cut(s) 866, 1266, 1333
BsiHKAI GWGCWC 1 cut(s) 1358
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 6 cut(s) 12, 89, 420, 1044, 1208, 1532
BslFI GGGAC 2 cut(s) 482, 947
BsmAI GTCTC 2 cut(s) 653, 934
BsmBI CGTCTC 1 cut(s) 934
BsmFI GGGAC 2 cut(s) 482, 947
BsoBI CYCGRG 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 1493
Bsp1286I GDGCHC 1 cut(s) 1358
Bsp1407I TGTACA 1 cut(s) 961
Bsp143I GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
BspACI CCGC 4 cut(s) 732, 749, 809, 908
BspCNI CTCAG 3 cut(s) 220, 817, 850
BspDI ATCGAT 3 cut(s) 866, 1266, 1333
BspFNI CGCG 3 cut(s) 749, 1430, 1460
BspLI GGNNCC 3 cut(s) 10, 242, 1116
BspMAI CTGCAG 1 cut(s) 1290
BspPI GGATC 5 cut(s) 61, 235, 248, 454, 774
BspQI GCTCTTC 1 cut(s) 1249
BspT104I TTCGAA 1 cut(s) 1493
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 684
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 1 cut(s) 1298
BssECI CCNNGG 3 cut(s) 982, 1044, 1505
BssMI GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
BssT1I CCWWGG 1 cut(s) 1505
Bst4CI ACNGT 7 cut(s) 8, 307, 945, 983, 1187, 1200, 1502
Bst6I CTCTTC 4 cut(s) 1154, 1249, 1332, 1399
BstAUI TGTACA 1 cut(s) 961
BstBI TTCGAA 1 cut(s) 1493
BstDEI CTNAG 5 cut(s) 207, 701, 825, 837, 948
BstDSI CCRYGG 1 cut(s) 982
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 4 cut(s) 87, 1033, 1326, 1404
BstFNI CGCG 3 cut(s) 749, 1430, 1460
BstHHI GCGC 2 cut(s) 749, 1460
BstKTI GATC 8 cut(s) 69, 226, 243, 373, 462, 769, 1066, 1266
BstMAI GTCTC 2 cut(s) 653, 934
BstMBI GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNSI RCATGY 3 cut(s) 784, 968, 1484
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 1043, 1206
BstSFI CTRYAG 1 cut(s) 1286
BstUI CGCG 3 cut(s) 749, 1430, 1460
BstV1I GCAGC 4 cut(s) 526, 529, 756, 1300
BstV2I GAAGAC 2 cut(s) 286, 492
BstX2I RGATCY 5 cut(s) 66, 240, 459, 766, 1063
BstXI CCANNNNNNTGG 1 cut(s) 1250
BstYI RGATCY 5 cut(s) 66, 240, 459, 766, 1063
Bsu15I ATCGAT 3 cut(s) 866, 1266, 1333
BsuI GTATCC 2 cut(s) 1250, 1539
BsuTUI ATCGAT 3 cut(s) 866, 1266, 1333
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 4 cut(s) 87, 1033, 1326, 1404
CfoI GCGC 2 cut(s) 749, 1460
Cfr13I GGNCC 1 cut(s) 1115
ClaI ATCGAT 3 cut(s) 866, 1266, 1333
Csp6I GTAC 3 cut(s) 791, 952, 962
CviAII CATG 7 cut(s) 400, 568, 781, 965, 1244, 1304, 1481
CviQI GTAC 3 cut(s) 791, 952, 962
DdeI CTNAG 5 cut(s) 207, 701, 825, 837, 948
DpnI GATC 8 cut(s) 68, 225, 242, 372, 461, 768, 1065, 1265
DpnII GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
DraI TTTAAA 1 cut(s) 1447
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eam1104I CTCTTC 4 cut(s) 1154, 1249, 1332, 1399
EarI CTCTTC 4 cut(s) 1154, 1249, 1332, 1399
Ecl136II GAGCTC 1 cut(s) 1356
Eco130I CCWWGG 1 cut(s) 1505
Eco24I GRGCYC 1 cut(s) 1358
Eco47I GGWCC 1 cut(s) 1115
Eco53kI GAGCTC 1 cut(s) 1356
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 1356
EcoO109I RGGNCCY 1 cut(s) 1115
EcoO65I GGTNACC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 1505
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 1358
ErhI CCWWGG 1 cut(s) 1505
Esp3I CGTCTC 1 cut(s) 934
FaeI CATG 7 cut(s) 403, 571, 784, 968, 1247, 1307, 1484
FalI AAGNNNNNCTT 2 cut(s) 1163, 1195
FaqI GGGAC 2 cut(s) 482, 947
FatI CATG 7 cut(s) 399, 567, 780, 964, 1243, 1303, 1480
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 4 cut(s) 540, 543, 745, 1289
FokI GGATG 4 cut(s) 94, 1040, 1333, 1411
FriOI GRGCYC 1 cut(s) 1358
Fsp4HI GCNGC 4 cut(s) 540, 543, 745, 1289
FspBI CTAG 6 cut(s) 290, 327, 411, 546, 728, 1163
GlaI GCGC 2 cut(s) 748, 1459
GluI GCNGC 4 cut(s) 540, 543, 745, 1289
GsuI CTGGAG 1 cut(s) 83
HapII CCGG 6 cut(s) 12, 89, 420, 1044, 1208, 1532
HhaI GCGC 2 cut(s) 749, 1460
Hin1II CATG 7 cut(s) 403, 571, 784, 968, 1247, 1307, 1484
Hin6I GCGC 2 cut(s) 747, 1458
HinP1I GCGC 2 cut(s) 747, 1458
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 2 cut(s) 698, 999
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 6 cut(s) 12, 89, 420, 1044, 1208, 1532
HphI GGTGA 5 cut(s) 44, 56, 409, 971, 1287
Hpy166II GTNNAC 3 cut(s) 303, 337, 688
Hpy188I TCNGA 5 cut(s) 66, 71, 210, 840, 1436
Hpy188III TCNNGA 8 cut(s) 21, 100, 157, 238, 411, 443, 973, 1019
Hpy8I GTNNAC 3 cut(s) 303, 337, 688
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 675, 1384, 1389, 1500
HpyCH4III ACNGT 7 cut(s) 8, 307, 945, 983, 1187, 1200, 1502
HpyCH4V TGCA 5 cut(s) 511, 677, 744, 1079, 1288
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 5 cut(s) 207, 701, 825, 837, 948
Hsp92II CATG 7 cut(s) 403, 571, 784, 968, 1247, 1307, 1484
HspAI GCGC 2 cut(s) 747, 1458
Ksp22I TGATCA 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
LguI GCTCTTC 1 cut(s) 1249
LmnI GCTCC 3 cut(s) 388, 986, 1361
Lsp1109I GCAGC 4 cut(s) 526, 529, 756, 1300
LweI GCATC 2 cut(s) 72, 1389
MaeI CTAG 6 cut(s) 290, 327, 411, 546, 728, 1163
MaeIII GTNAC 5 cut(s) 131, 707, 854, 1340, 1534
MalI GATC 8 cut(s) 68, 225, 242, 372, 461, 768, 1065, 1265
MboI GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
MflI RGATCY 5 cut(s) 66, 240, 459, 766, 1063
MhlI GDGCHC 1 cut(s) 1358
MluCI AATT 5 cut(s) 125, 528, 640, 841, 1370
MlyI GAGTC 7 cut(s) 18, 154, 408, 428, 970, 1153, 1318
MmeI TCCRAC 3 cut(s) 37, 94, 683
MnlI CCTC 8 cut(s) 186, 214, 698, 924, 1128, 1303, 1311, 1400
Mph1103I ATGCAT 1 cut(s) 513
MseI TTAA 7 cut(s) 143, 302, 654, 1182, 1446, 1475, 1541
MslI CAYNNNNRTG 2 cut(s) 605, 1248
MspI CCGG 6 cut(s) 12, 89, 420, 1044, 1208, 1532
MspR9I CCNGG 2 cut(s) 1045, 1208
MvnI CGCG 3 cut(s) 749, 1430, 1460
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 2 cut(s) 1045, 1208
NdeII GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
NlaIII CATG 7 cut(s) 403, 571, 784, 968, 1247, 1307, 1484
NlaIV GGNNCC 3 cut(s) 10, 242, 1116
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 3 cut(s) 784, 968, 1484
NspV TTCGAA 1 cut(s) 1493
OliI CACNNNNGTG 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 443
PciI ACATGT 2 cut(s) 780, 964
PciSI GCTCTTC 1 cut(s) 1249
PcsI WCGNNNNNNNCGW 1 cut(s) 926
PfeI GAWTC 6 cut(s) 17, 109, 286, 627, 1144, 1282
PfoI TCCNGGA 1 cut(s) 1206
PkrI GCNGC 4 cut(s) 541, 544, 746, 1290
PleI GAGTC 7 cut(s) 18, 154, 408, 428, 970, 1153, 1318
PpsI GAGTC 7 cut(s) 18, 154, 408, 428, 970, 1153, 1318
PpuMI RGGWCCY 1 cut(s) 1115
PscI ACATGT 2 cut(s) 780, 964
Psp124BI GAGCTC 1 cut(s) 1358
Psp5II RGGWCCY 1 cut(s) 1115
PspEI GGTNACC 1 cut(s) 131
PspN4I GGNNCC 3 cut(s) 10, 242, 1116
PspPI GGNCC 1 cut(s) 1115
PspPPI RGGWCCY 1 cut(s) 1115
PstI CTGCAG 1 cut(s) 1290
PsuI RGATCY 5 cut(s) 66, 240, 459, 766, 1063
RsaI GTAC 3 cut(s) 792, 953, 963
RsaNI GTAC 3 cut(s) 791, 952, 962
RseI CAYNNNNRTG 2 cut(s) 605, 1248
SacI GAGCTC 1 cut(s) 1358
SapI GCTCTTC 1 cut(s) 1249
SaqAI TTAA 7 cut(s) 143, 302, 654, 1182, 1446, 1475, 1541
SatI GCNGC 4 cut(s) 540, 543, 745, 1289
Sau3AI GATC 8 cut(s) 66, 223, 240, 370, 459, 766, 1063, 1263
Sau96I GGNCC 1 cut(s) 1115
SchI GAGTC 7 cut(s) 18, 154, 408, 428, 970, 1153, 1318
ScrFI CCNGG 2 cut(s) 1045, 1208
SduI GDGCHC 1 cut(s) 1358
SfaNI GCATC 2 cut(s) 72, 1389
SfcI CTRYAG 1 cut(s) 1286
Sfr274I CTCGAG 1 cut(s) 443
SfuI TTCGAA 1 cut(s) 1493
SinI GGWCC 1 cut(s) 1115
SlaI CTCGAG 1 cut(s) 443
SmiI ATTTAAAT 1 cut(s) 1447
SmiMI CAYNNNNRTG 2 cut(s) 605, 1248
SmlI CTYRAG 3 cut(s) 113, 443, 464
SmoI CTYRAG 3 cut(s) 113, 443, 464
Sse9I AATT 5 cut(s) 125, 528, 640, 841, 1370
SsiI CCGC 4 cut(s) 732, 749, 809, 908
SspMI CTAG 6 cut(s) 290, 327, 411, 546, 728, 1163
SstI GAGCTC 1 cut(s) 1358
StyD4I CCNGG 2 cut(s) 1043, 1206
StyI CCWWGG 1 cut(s) 1505
SwaI ATTTAAAT 1 cut(s) 1447
TaaI ACNGT 7 cut(s) 8, 307, 945, 983, 1187, 1200, 1502
TasI AATT 5 cut(s) 125, 528, 640, 841, 1370
TatI WGTACW 2 cut(s) 951, 961
TfiI GAWTC 6 cut(s) 17, 109, 286, 627, 1144, 1282
Tru1I TTAA 7 cut(s) 143, 302, 654, 1182, 1446, 1475, 1541
Tru9I TTAA 7 cut(s) 143, 302, 654, 1182, 1446, 1475, 1541
TseI GCWGC 4 cut(s) 539, 542, 744, 1288
TspDTI ATGAA 5 cut(s) 227, 388, 1292, 1319, 1383
TspGWI ACGGA 3 cut(s) 94, 184, 995
VpaK11BI GGWCC 1 cut(s) 1115
XapI RAATTY 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 410
XceI RCATGY 3 cut(s) 784, 968, 1484
XhoI CTCGAG 1 cut(s) 443
XspI CTAG 6 cut(s) 290, 327, 411, 546, 728, 1163
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.