AT1G19530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013191
Physical Location & Seq
Forward (+)
6763765 .. 6765049
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19530.1

Sequence Viewer

Length: 354 bp
ATGGGTTCTTTAATGTCAGGATGGGACTCTCGAGTAAGGGATCCCAAATCAGTGAGAAGGTGCAAGTCGCTCACAAGAGAAGAAATCGACACTTTTTGGAAAACGAAGAAGAAGAATGAAGAAGAAGAACATGTTCAAGCCTTTTCCAAGTTGGTAACTCAGGAAGGTGCACAAAGCCAAGCGAAAGAGAAGAAGAGTGTAGATGATCTTTTTGAGAACCAAAGCAAGAGTAGTGGATGGTGGAGAAAAACCTACTGGGCGTTCTTGAATGAGCCGAGGGAGGAAGAGGGTCGACCGAACAACTACGTGTCGCAATTCAAAGTTGCTCACATCGCCAAAATTGCGGGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.66

Weight (kDa)

9.24

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 35, 48
AflIII ACRYGT 2 cut(s) 130, 306
AgsI TTSAA 3 cut(s) 137, 268, 319
Alw21I GWGCWC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 2 cut(s) 35, 48
Ama87I CYCGRG 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 172
BamHI GGATCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 172
BccI CCATC 2 cut(s) 15, 231
BmeT110I CYCGRG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 26, 242
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 172, 350
Bsp143I GATC 2 cut(s) 40, 205
BspACI CCGC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 2 cut(s) 35, 48
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 40, 205
Bst6I CTCTTC 2 cut(s) 188, 279
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 26, 242
BstKTI GATC 2 cut(s) 43, 208
BstMBI GATC 2 cut(s) 40, 205
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 332, 341
BstNSI RCATGY 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 26, 242
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 346
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 140, 177, 274, 348
CviKI_1 RGCY 4 cut(s) 140, 177, 274, 348
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 42, 207
DpnII GATC 2 cut(s) 40, 205
Eam1104I CTCTTC 2 cut(s) 188, 279
EarI CTCTTC 2 cut(s) 188, 279
Eco24I GRGCYC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 350
FaeI CATG 1 cut(s) 134
FaiI YATR 1 cut(s) 132
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 337
FblI GTMKAC 1 cut(s) 292
FokI GGATG 2 cut(s) 33, 249
FriOI GRGCYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 170, 293
Hpy188III TCNNGA 4 cut(s) 18, 30, 161, 265
Hpy8I GTNNAC 2 cut(s) 170, 293
HpyAV CCTTC 2 cut(s) 51, 158
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 63, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 341
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 40, 205
LpnPI CCDG 3 cut(s) 3, 146, 241
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 42, 207
MboI GATC 2 cut(s) 40, 205
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 172, 350
MluCI AATT 2 cut(s) 314, 339
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 270, 274, 280
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 332, 341
NdeII GATC 2 cut(s) 40, 205
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 300
NspI RCATGY 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 30
PciI ACATGT 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 132
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 307
PscI ACATGT 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 40
SalI GTCGAC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 2 cut(s) 40, 205
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 2 cut(s) 172, 350
SetI ASST 4 cut(s) 62, 169, 254, 309
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 314, 339
SsiI CCGC 1 cut(s) 344
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 31, 87, 292
TaqII GACCGA 1 cut(s) 310
TasI AATT 2 cut(s) 314, 339
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 57
VneI GTGCAC 1 cut(s) 168
XceI RCATGY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.