Prupe.1G377400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013191
Physical Location & Seq
Reverse (-)
34155372 .. 34156728
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G377400.1

Sequence Viewer

Length: 405 bp
ATGGGTTCACTGATGGCAGGATGGGACTCACCCGTCCTAAATTCCAAACCAGATGTGTGCAAGAGGAATCAATCACTCACCAAGGACGAGATTGAAGCTTACTGGAGAGCCAACAATAATGAATTACATCAAACCACCACTACTCAGGAAATCAAAGCTGATGATGAATCGGGAAGAAAATTACAGAAATCAAACACTTTTCCTGCAGCCAAAACTAAGGAGACAGATATTCATGAAACAAACGCTCACAAAATCAGAAACAACAAGGGCTGGTGGACTTTAAGCAATTGGGCATTTCTGAATGAACCCCCTCTGTCGGAAAGCGCTTCCAACACGTACGCGTCACAGTTCCACGTACCCAAATGGGCCCCCAAATCAGACACTCCTGACCAAATTACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

6.41

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccII CGCG 1 cut(s) 341
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 2 cut(s) 338, 357
AfeI AGCGCT 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 316
AflIII ACRYGT 2 cut(s) 333, 339
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 2 cut(s) 98, 158
AluI AGCT 2 cut(s) 98, 158
Alw26I GTCTC 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 325
AoxI GGCC 1 cut(s) 366
ApaI GGGCCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 366, 367
AsuHPI GGTGA 2 cut(s) 21, 70
BaeGI GKGCMC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 7, 15
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 327
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 366, 367
BmiI GGNNCC 2 cut(s) 368, 369
BpmI CTGGAG 1 cut(s) 124
BsaAI YACGTR 2 cut(s) 336, 355
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 368
BsiWI CGTACG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 368
Bsp120I GGGCCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 370
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 368, 369
BspMAI CTGCAG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 348
BstBAI YACGTR 2 cut(s) 336, 355
BstDEI CTNAG 2 cut(s) 144, 216
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstMAI GTCTC 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 8
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 366, 367
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 337, 356
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 98, 110, 158, 209, 270, 368
CviKI_1 RGCY 6 cut(s) 98, 110, 158, 209, 270, 368
CviQI GTAC 2 cut(s) 337, 356
DdeI CTNAG 2 cut(s) 144, 216
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 370
Eco47III AGCGCT 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 236
FaiI YATR 1 cut(s) 234
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 1 cut(s) 368
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 326
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 26, 67, 167
HphI GGTGA 2 cut(s) 21, 70
Hpy166II GTNNAC 2 cut(s) 8, 276
Hpy188I TCNGA 4 cut(s) 257, 300, 319, 379
Hpy188III TCNNGA 4 cut(s) 146, 171, 233, 386
Hpy8I GTNNAC 2 cut(s) 8, 276
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 2 cut(s) 335, 354
HpyCH4V TGCA 2 cut(s) 60, 206
HpyF3I CTNAG 2 cut(s) 144, 216
HpySE526I ACGT 2 cut(s) 335, 354
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 324
LpnPI CCDG 7 cut(s) 3, 63, 88, 131, 216, 256, 399
Lsp1109I GCAGC 1 cut(s) 218
MaeII ACGT 2 cut(s) 335, 354
MaeIII GTNAC 1 cut(s) 342
MboII GAAGA 1 cut(s) 186
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 5 cut(s) 40, 122, 179, 286, 393
MluI ACGCGT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 297, 354
MnlI CCTC 2 cut(s) 57, 321
MseI TTAA 1 cut(s) 281
MunI CAATTG 1 cut(s) 286
MvnI CGCG 1 cut(s) 341
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 368, 369
NmuCI GTSAC 1 cut(s) 342
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 2 cut(s) 67, 167
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 2 cut(s) 336, 355
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 368, 369
PspOMI GGGCCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 366, 367
PstI CTGCAG 1 cut(s) 208
RsaI GTAC 2 cut(s) 338, 357
RsaNI GTAC 2 cut(s) 337, 356
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 2 cut(s) 366, 367
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 370
SetI ASST 4 cut(s) 100, 160, 338, 357
SfcI CTRYAG 1 cut(s) 204
Sse9I AATT 5 cut(s) 40, 122, 179, 286, 393
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 2 cut(s) 338, 357
TasI AATT 5 cut(s) 40, 122, 179, 286, 393
TfiI GAWTC 2 cut(s) 67, 167
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 5 cut(s) 135, 180, 221, 249, 318
TspRI CASTG 1 cut(s) 15
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.