Rh6AG416500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013191
Physical Location & Seq
Forward (+)
61114938 .. 61116600
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG416500.1

Sequence Viewer

Length: 441 bp
ATGGGTTCACTAATGCCAGGATGGAAATCAAAGTCAGATATATACAAGAGGAATCATTCACTCACAAATGAGGAGATTGAAGCCTTCTGGAGATCAAATAAGAAACCTGACGAGAAACAACATATCATCGATGGTGATACCATCATCTGTGAGGAAAAGACCGCTACGGTTAGTAAGTCCGGCAAAAAATTTGAAAAATCAAGCTCTATGCCTCTGGCTAGAACCAAACTTGAGCAGGATCAGAAATACTTCATGCACGGTGAGACTGAAACAATGGCCAGCACCACTGACAAACTCGTAGATAACAACGGCTGGTGGACTAGGAGCAACTGGGCATTTCTGAATGAACCGCCTCCATCTGAAGGCGCTTCTAAAACTAGTTACGCATCACAGTTTCACGTAGCCAGCTCCTCCGGCGGGGTCGACGGAATTAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

6.42

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AciI CCGC 3 cut(s) 162, 350, 417
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 362, 417
AgsI TTSAA 2 cut(s) 80, 194
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 204, 408
AluI AGCT 2 cut(s) 204, 408
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 146, 272
BalI TGGCCA 1 cut(s) 278
BccI CCATC 4 cut(s) 15, 125, 149, 364
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 219, 321, 378
BfoI RGCGCY 1 cut(s) 369
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 417
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 362, 417
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 86, 400
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 2 cut(s) 180, 414
BslI CCNNNNNNNGG 2 cut(s) 362, 417
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 92, 238
BspACI CCGC 3 cut(s) 162, 350, 417
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 129
BspPI GGATC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 335
BssMI GATC 2 cut(s) 92, 238
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 169, 260, 393
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 280, 406
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 95, 241
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 92, 238
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 280, 406
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 435
CviAII CATG 1 cut(s) 253
CviJI RGCY 7 cut(s) 83, 204, 218, 278, 312, 404, 408
CviKI_1 RGCY 7 cut(s) 83, 204, 218, 278, 312, 404, 408
CviQI GTAC 1 cut(s) 435
DpnI GATC 2 cut(s) 94, 240
DpnII GATC 2 cut(s) 92, 238
EaeI YGGCCR 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 41, 43, 123, 209, 254
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 410
FblI GTMKAC 1 cut(s) 423
FokI GGATG 1 cut(s) 33
FspBI CTAG 3 cut(s) 219, 321, 378
GlaI GCGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 180, 414
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 180, 414
HphI GGTGA 2 cut(s) 146, 272
Hpy166II GTNNAC 3 cut(s) 8, 318, 424
Hpy188I TCNGA 4 cut(s) 37, 243, 342, 361
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 3 cut(s) 8, 318, 424
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 94, 356
HpyCH4III ACNGT 3 cut(s) 169, 260, 393
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 92, 238
LmnI GCTCC 2 cut(s) 324, 413
LweI GCATC 1 cut(s) 395
MaeI CTAG 3 cut(s) 219, 321, 378
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 94, 240
MboI GATC 2 cut(s) 92, 238
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 2 cut(s) 188, 429
MluNI TGGCCA 1 cut(s) 278
MnlI CCTC 6 cut(s) 42, 64, 145, 222, 363, 421
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 439
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 2 cut(s) 180, 414
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 414
NdeII GATC 2 cut(s) 92, 238
NlaIII CATG 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 439
Sau3AI GATC 2 cut(s) 92, 238
ScaI AGTACT 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 109, 206, 402, 410
SfaNI GCATC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 2 cut(s) 188, 429
SsiI CCGC 3 cut(s) 162, 350, 417
SspMI CTAG 3 cut(s) 219, 321, 378
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 169, 260, 393
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 129, 423
TasI AATT 2 cut(s) 188, 429
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 241, 360
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 219, 321, 378
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.