RLG00000011265

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013191
Physical Location & Seq
Reverse (-)
8080725 .. 8081458
734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011265

Sequence Viewer

Length: 441 bp
ATGGGTTCACTAATGCCAGGATGGAAATCAAAGTCAGATGTATACAAGAGGAATCATTCTCTCACAAAAGAGGAGATTGAAGCCTTCTGGAGATCCAATAAGAAACCAGACGAGAAACAACATATCATCGATGGTGATACCATCATCTGTGAGGAAAAGACCGCTACGGTTATTAAGTCCGGCAAAAAATTTGAAAAATCAAGCTCGATGCCCCTGGCTAGAACCAAACTTGAGCAGGATCAGAGATATTTCATGCACGGCGAGACTGAAACCATGGCCAGCACCGCTGACAAACTCGTAGATAACAACGGCTGGTGGACTAGGAGCAACTGGGCATTTCTGAATGAACCCCCTCCATCTGAAGGCGCTCCTAAAACTAGTTACGCATCACAGTTTCACGTAGCCAGCTCCTCCAGCGGGGTCGACGGAATTAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.42

Weight (kDa)

6.91

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 42, 423
AciI CCGC 3 cut(s) 162, 285, 417
AclWI GGATC 2 cut(s) 87, 246
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 362, 417
AgsI TTSAA 2 cut(s) 80, 194
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 2 cut(s) 16, 213
AluBI AGCT 2 cut(s) 204, 408
AluI AGCT 2 cut(s) 204, 408
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 2 cut(s) 87, 246
AoxI GGCC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 146
BalI TGGCCA 1 cut(s) 278
BccI CCATC 4 cut(s) 15, 125, 149, 364
BceAI ACGGC 2 cut(s) 274, 325
BciT130I CCWGG 2 cut(s) 18, 215
BcoDI GTCTC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 219, 321, 378
BfoI RGCGCY 1 cut(s) 369
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 18, 215
BmrFI CCNGG 2 cut(s) 18, 215
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 198, 395
BmuI ACTGGG 1 cut(s) 340
BpmI CTGGAG 2 cut(s) 109, 397
BpuEI CTTGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 213, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 417
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 2 cut(s) 18, 215
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 213, 273
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 362, 417
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 86, 400
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 362, 417
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 92, 238
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 162, 285, 417
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 129
BspPI GGATC 2 cut(s) 87, 246
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 213, 273
BssMI GATC 2 cut(s) 92, 238
BssNAI GTATAC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 18, 215
Bst4CI ACNGT 2 cut(s) 169, 393
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 280, 406
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 95, 241
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 92, 238
BstMWI GCNNNNNNNGC 2 cut(s) 284, 414
BstNI CCWGG 2 cut(s) 18, 215
BstSCI CCNGG 2 cut(s) 16, 213
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 280, 406
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 435
CviAII CATG 2 cut(s) 253, 274
CviJI RGCY 7 cut(s) 83, 204, 218, 278, 312, 404, 408
CviKI_1 RGCY 7 cut(s) 83, 204, 218, 278, 312, 404, 408
CviQI GTAC 1 cut(s) 435
DpnI GATC 2 cut(s) 94, 240
DpnII GATC 2 cut(s) 92, 238
EaeI YGGCCR 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 16, 213
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 256, 277
FaiI YATR 4 cut(s) 43, 123, 254, 275
FatI CATG 2 cut(s) 252, 273
FauI CCCGC 1 cut(s) 410
FblI GTMKAC 2 cut(s) 42, 423
FokI GGATG 1 cut(s) 33
FspBI CTAG 3 cut(s) 219, 321, 378
GlaI GCGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 109, 397
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 256, 277
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 4 cut(s) 8, 43, 318, 424
Hpy188I TCNGA 4 cut(s) 37, 243, 342, 361
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 4 cut(s) 8, 43, 318, 424
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 94, 356
HpyCH4III ACNGT 2 cut(s) 169, 393
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 414
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 256, 277
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 92, 238
LmnI GCTCC 3 cut(s) 324, 373, 413
LweI GCATC 2 cut(s) 198, 395
MaeI CTAG 3 cut(s) 219, 321, 378
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 94, 240
MboI GATC 2 cut(s) 92, 238
MflI RGATCY 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 2 cut(s) 188, 429
MluNI TGGCCA 1 cut(s) 278
MnlI CCTC 5 cut(s) 42, 64, 145, 363, 421
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 2 cut(s) 174, 439
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 287, 417
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 18, 215
MvaI CCWGG 2 cut(s) 18, 215
MwoI GCNNNNNNNGC 2 cut(s) 284, 414
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 92, 238
NlaIII CATG 2 cut(s) 256, 277
PfeI GAWTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 16, 213
PspGI CCWGG 2 cut(s) 16, 213
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 174, 439
Sau3AI GATC 2 cut(s) 92, 238
ScaI AGTACT 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 18, 215
SetI ASST 3 cut(s) 206, 402, 410
SfaNI GCATC 2 cut(s) 198, 395
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 2 cut(s) 188, 429
SsiI CCGC 3 cut(s) 162, 285, 417
SspMI CTAG 3 cut(s) 219, 321, 378
StyD4I CCNGG 2 cut(s) 16, 213
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 169, 393
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 129, 206, 423
TasI AATT 2 cut(s) 188, 429
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 174, 439
Tru9I TTAA 2 cut(s) 174, 439
TspDTI ATGAA 2 cut(s) 241, 360
TspGWI ACGGA 1 cut(s) 441
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 42, 423
XspI CTAG 3 cut(s) 219, 321, 378
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.