Rh6DG416200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013191
Physical Location & Seq
Forward (+)
59987724 .. 59988458
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG416200.1

Sequence Viewer

Length: 441 bp
ATGGGCTCACTAATGCCAGGATGGAAATCAAAGTCAGATATATACGAGAGGAATCATTCACTCACAAAAGAGGAGATTGAAGCCTTCTGGAGATCAAATAAGAAACCAGACGAGAAACAACATATCATCGATGGTGATACCATCATCTGTGAGGGAAAGACCGCTACCGATAGTAAGTCCGGCAAAAAATTTGAAAAATCAAGCTCTATGCCTCTGGCTAGAACCAAACTTGATCAGGATCAGAAATACTTCATGCACGGCGAAACTGAAACCATTGCCAGCACCACTGACAAACTCGTAGATAACAACGGCTGGTGGACTAGGAGCAACTGGGCATTTCTGAATGAACCGCCTCCATCTGAAGGCGCTCCTAAAACTAGATACGCATCACAGTTTCACGTAGCCAGCTCCTCCGGCAGGGTCGACGGAATTAGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.46

Weight (kDa)

6.91

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AciI CCGC 2 cut(s) 162, 350
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 362, 417
AgsI TTSAA 2 cut(s) 80, 194
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 204, 408
AluI AGCT 2 cut(s) 204, 408
AlwI GGATC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 146
BanII GRGCYC 1 cut(s) 8
BccI CCATC 4 cut(s) 15, 125, 149, 364
BceAI ACGGC 2 cut(s) 274, 325
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 232
BfaI CTAG 3 cut(s) 219, 321, 378
BfoI RGCGCY 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 3 cut(s) 25, 237, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 417
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 3 cut(s) 25, 237, 385
BseBI CCWGG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 3 cut(s) 25, 237, 385
BseLI CCNNNNNNNGG 2 cut(s) 362, 417
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 86, 400
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 2 cut(s) 180, 414
BslI CCNNNNNNNGG 2 cut(s) 362, 417
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 92, 232, 238
BspACI CCGC 2 cut(s) 162, 350
BspDI ATCGAT 1 cut(s) 129
BspPI GGATC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 335
BssMI GATC 3 cut(s) 92, 232, 238
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 280, 406
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 3 cut(s) 95, 235, 241
BstMBI GATC 3 cut(s) 92, 232, 238
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 280, 406
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 129
CviAII CATG 1 cut(s) 253
CviJI RGCY 7 cut(s) 6, 83, 204, 218, 312, 404, 408
CviKI_1 RGCY 7 cut(s) 6, 83, 204, 218, 312, 404, 408
DpnI GATC 3 cut(s) 94, 234, 240
DpnII GATC 3 cut(s) 92, 232, 238
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 381
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 41, 43, 123, 209, 254
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 423
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 3 cut(s) 219, 321, 378
GlaI GCGC 1 cut(s) 367
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 2 cut(s) 180, 414
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 180, 414
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 318, 424
Hpy188I TCNGA 4 cut(s) 37, 243, 342, 361
Hpy188III TCNNGA 2 cut(s) 88, 236
Hpy8I GTNNAC 2 cut(s) 318, 424
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 94, 356
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 92, 232, 238
LmnI GCTCC 3 cut(s) 324, 373, 413
LweI GCATC 1 cut(s) 395
MaeI CTAG 3 cut(s) 219, 321, 378
MaeII ACGT 1 cut(s) 399
MalI GATC 3 cut(s) 94, 234, 240
MboI GATC 3 cut(s) 92, 232, 238
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 188, 429
MnlI CCTC 6 cut(s) 42, 64, 145, 222, 363, 421
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 439
MspI CCGG 2 cut(s) 180, 414
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 414
NdeII GATC 3 cut(s) 92, 232, 238
NlaIII CATG 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 439
Sau3AI GATC 3 cut(s) 92, 232, 238
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 206, 402, 410
SfaNI GCATC 1 cut(s) 395
Sse9I AATT 2 cut(s) 188, 429
SsiI CCGC 2 cut(s) 162, 350
SspMI CTAG 3 cut(s) 219, 321, 378
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 129, 423
TasI AATT 2 cut(s) 188, 429
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 241, 360
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 423
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 219, 321, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.