Prupe.2G019400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
1909085 .. 1911110
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G019400.3

Sequence Viewer

Length: 177 bp
ATGGGTTCACTCAATGCAGGATGGGACTCACCCGTTCTAAATTCCAAACCAGATGTGTGCAAGAGGAATCAATCACTCACCAAGGACGAGATTGAAGCTTACTGGAGAGCCAACAATGAATTACATCATACCACCACTACTCAGAGTCTTTTGTTTCAGGATCAAATCAGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.75

Weight (kDa)

6.01

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013191)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 21, 70
BccI CCATC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 26
CspCI CAANNNNNGTGG 1 cut(s) 152
CviJI RGCY 2 cut(s) 98, 110
CviKI_1 RGCY 2 cut(s) 98, 110
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaiI YATR 1 cut(s) 129
FaqI GGGAC 1 cut(s) 38
FokI GGATG 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 26, 67, 145
HphI GGTGA 2 cut(s) 21, 70
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 17, 60
HpyF3I CTNAG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 3, 63, 88, 143, 154
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 2 cut(s) 40, 119
MlyI GAGTC 2 cut(s) 20, 154
MnlI CCTC 1 cut(s) 57
NdeII GATC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 67
PleI GAGTC 2 cut(s) 20, 153
PpsI GAGTC 2 cut(s) 20, 153
Sau3AI GATC 1 cut(s) 160
SchI GAGTC 2 cut(s) 20, 154
SetI ASST 2 cut(s) 100, 173
SgeI CNNG 8 cut(s) 30, 44, 62, 73, 94, 100, 115, 170
Sse9I AATT 2 cut(s) 40, 119
StyI CCWWGG 1 cut(s) 81
TasI AATT 2 cut(s) 40, 119
TfiI GAWTC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 132
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.