Rroxscaffold_7G00166970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013191
Physical Location & Seq
Reverse (-)
8295783 .. 8297024
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166970.1

Sequence Viewer

Length: 312 bp
ATGGTGATACCGTCATCTGTGAGGAAAAGACCGCTACGGTTATTAAGTCCGGCAAAAAATTTGAAAAAATCAAGCTCTATGCCTCTGGCTAGAACCAAACTTGAGCAGGATCAGAAATACTTCATGCACGGCGAGACTGAAACCATGGCCAGCACCACTGACAAACTCGTAGATAACAACGGCTGGTGGACTAGGAGCAACTGGGCATTTCTGAATGAACCGCCTCCATCTGAAGGCGCTCCTAAAACTAGTTACGCATCACAGTTTCACGTAGCCAGCTCCTCCGGCAGGGTCGACGGAATTAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.47

Weight (kDa)

9.82

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 2 cut(s) 32, 221
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 233, 288
AgsI TTSAA 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 2 cut(s) 75, 279
AluI AGCT 2 cut(s) 75, 279
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 149
BccI CCATC 1 cut(s) 235
BceAI ACGGC 2 cut(s) 145, 196
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 3 cut(s) 90, 192, 249
BfoI RGCGCY 1 cut(s) 240
BmcAI AGTACT 1 cut(s) 307
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 288
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 233, 288
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 50, 285
BslI CCNNNNNNNGG 2 cut(s) 233, 288
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 2 cut(s) 32, 221
BspANI GGCC 1 cut(s) 149
BspPI GGATC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 12, 39, 264
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 151, 277
BstDSI CCRYGG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 151, 277
CfoI GCGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 124, 145
CviJI RGCY 6 cut(s) 75, 89, 149, 183, 275, 279
CviKI_1 RGCY 6 cut(s) 75, 89, 149, 183, 275, 279
CviQI GTAC 1 cut(s) 306
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 127, 148
FaiI YATR 3 cut(s) 80, 125, 146
FatI CATG 2 cut(s) 123, 144
FblI GTMKAC 1 cut(s) 294
FspBI CTAG 3 cut(s) 90, 192, 249
GlaI GCGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 149
HapII CCGG 2 cut(s) 50, 285
HhaI GCGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 127, 148
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HpaII CCGG 2 cut(s) 50, 285
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 189, 295
Hpy188I TCNGA 3 cut(s) 114, 213, 232
Hpy8I GTNNAC 2 cut(s) 189, 295
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 3 cut(s) 12, 39, 264
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 127, 148
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 195, 244, 284
LpnPI CCDG 9 cut(s) 63, 71, 92, 163, 169, 187, 274, 289, 298
LweI GCATC 1 cut(s) 266
MaeI CTAG 3 cut(s) 90, 192, 249
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 58, 300
MluNI TGGCCA 1 cut(s) 149
MnlI CCTC 4 cut(s) 15, 93, 234, 292
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 44, 310
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 2 cut(s) 50, 285
MwoI GCNNNNNNNGC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 144
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 127, 148
PdmI GAANNNNTTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 271
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 44, 310
Sau3AI GATC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 307
SetI ASST 3 cut(s) 77, 273, 281
SfaNI GCATC 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 2 cut(s) 58, 300
SsiI CCGC 2 cut(s) 32, 221
SspMI CTAG 3 cut(s) 90, 192, 249
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 12, 39, 264
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 58, 300
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 2 cut(s) 44, 310
Tru9I TTAA 2 cut(s) 44, 310
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 112, 231
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 286
XapI RAATTY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 3 cut(s) 90, 192, 249
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.