FvH4_2g39630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013191
Physical Location & Seq
Reverse (-)
28412983 .. 28414419
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39630.t1

Sequence Viewer

Length: 480 bp
ATGGGTTCACTAATGGCAGGATGGGACTCGCCGGTCCTCAAATCAAAGTCAGATATATACAAGAGGAATCGGTCACTCACAAACGAAGACATTGAAGCTTTTCGGAGATCACATAAGAAACCAGAGGAGAAGCAACAACATATCAACGATGGTGATGATGCTATCATCTATGAGGAGCAGACGGCTACTGTTAATAAGTCGGGCAAAACGTTTCAGAAATCGAGCACTATGCCTCTGCTGGCTAAAAATACCAGTACAGAGGAGGGTCAGAAGAAATACTTCATGCACGGTGAGACTGAAACCATGGCCAGCACCGCTCACAAACTCGTAGACAACACCGGCTGGTGGACTAGGAGCAACTGGGCATTTCTGAATGAACCCCCTAAATCTGAAGGCGCTCCTGACTCTAGTAAACGTTACGCTTCACAGTTTCATGTAGCCCGCTCCGCAGGCGGTGGCGTCGACGGAATTAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

7.94

Isoelectric Point (pI)

68.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19530 AT1G19530
fragaria_vesca FvH4_2g39630
malus_domestica MD08G1029700.v1.1
prunus_persica Prupe.1G377400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1 Prupe.2G019400_v2.0.a1
pyrus_communis pycom08g02360
rosa_chinensis RchiOBHm_Chr6g0301271
rosa_laevigata RLG00000011265
rosa_multiflora Rmu_sc0013354.1_g000014
rosa_roxburghii Rroxscaffold_7G00166970
rosa_rugosa Rorug06G0302900
rosa_samantha Rh6AG416500 Rh6DG416200 Rh6DG416300
rosa_wichuraiana Rw6G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccBSI CCGCTC 2 cut(s) 317, 444
AccI GTMKAC 2 cut(s) 330, 462
AciI CCGC 4 cut(s) 315, 442, 447, 453
AclI AACGTT 2 cut(s) 209, 415
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 2 cut(s) 256, 475
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 306
Asp700I GAANNNNTTC 2 cut(s) 99, 278
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 164, 302
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 227
BccI CCATC 2 cut(s) 15, 143
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 351, 408
BfoI RGCGCY 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 2 cut(s) 31, 338
Bse1I ACTGG 2 cut(s) 252, 365
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 252, 365
BseRI GAGGAG 3 cut(s) 140, 188, 275
BshFI GGCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 32, 339
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 4 cut(s) 315, 442, 447, 453
BspANI GGCC 1 cut(s) 308
BsrBI CCGCTC 2 cut(s) 317, 444
BsrFI RCCGGY 2 cut(s) 31, 338
BsrI ACTGG 2 cut(s) 252, 365
BssAI RCCGGY 2 cut(s) 31, 338
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 190, 290, 429
BstACI GRCGYC 1 cut(s) 459
BstC8I GCNNGC 4 cut(s) 240, 310, 442, 451
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 3 cut(s) 314, 446, 450
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 4 cut(s) 240, 310, 442, 451
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 2 cut(s) 31, 338
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 255, 474
CviAII CATG 3 cut(s) 283, 304, 434
CviJI RGCY 6 cut(s) 98, 185, 242, 308, 342, 440
CviKI_1 RGCY 6 cut(s) 98, 185, 242, 308, 342, 440
CviQI GTAC 2 cut(s) 255, 474
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 286, 307, 437
FaiI YATR 9 cut(s) 56, 58, 114, 141, 171, 230, 284, 305, 435
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 282, 303, 433
FauI CCCGC 1 cut(s) 449
FblI GTMKAC 2 cut(s) 330, 462
FokI GGATG 1 cut(s) 33
FspBI CTAG 2 cut(s) 351, 408
GlaI GCGC 1 cut(s) 397
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 1 cut(s) 308
HapII CCGG 2 cut(s) 32, 339
HgaI GACGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 286, 307, 437
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 26, 67, 404
HpaII CCGG 2 cut(s) 32, 339
HphI GGTGA 2 cut(s) 164, 302
Hpy166II GTNNAC 5 cut(s) 8, 331, 348, 413, 463
Hpy188I TCNGA 6 cut(s) 52, 105, 216, 270, 372, 391
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 5 cut(s) 8, 331, 348, 413, 463
Hpy99I CGWCG 2 cut(s) 464, 467
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 3 cut(s) 190, 290, 429
HpyCH4IV ACGT 2 cut(s) 209, 415
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 446, 450
HpySE526I ACGT 2 cut(s) 209, 415
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 286, 307, 437
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 4 cut(s) 175, 354, 403, 449
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 351, 408
MaeII ACGT 2 cut(s) 209, 415
MaeIII GTNAC 2 cut(s) 72, 416
MalI GATC 1 cut(s) 109
MbiI CCGCTC 2 cut(s) 317, 444
MboI GATC 1 cut(s) 107
MboII GAAGA 2 cut(s) 98, 283
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 1 cut(s) 468
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 2 cut(s) 20, 398
MnlI CCTC 7 cut(s) 47, 57, 118, 166, 243, 253, 256
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 2 cut(s) 99, 278
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 2 cut(s) 32, 339
MwoI GCNNNNNNNGC 3 cut(s) 314, 446, 450
NcoI CCATGG 1 cut(s) 303
NdeII GATC 1 cut(s) 107
NlaIII CATG 3 cut(s) 286, 307, 437
NmuCI GTSAC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PdmI GAANNNNTTC 2 cut(s) 99, 278
PfeI GAWTC 1 cut(s) 67
PleI GAGTC 2 cut(s) 20, 398
PpsI GAGTC 2 cut(s) 20, 398
Psp1406I AACGTT 2 cut(s) 209, 415
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 2 cut(s) 256, 475
RsaNI GTAC 2 cut(s) 255, 474
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 2 cut(s) 20, 398
SduI GDGCHC 1 cut(s) 227
SetI ASST 4 cut(s) 100, 212, 418, 479
SfaNI GCATC 1 cut(s) 148
SgrDI CGTCGACG 1 cut(s) 461
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 468
SsiI CCGC 4 cut(s) 315, 442, 447, 453
SspMI CTAG 2 cut(s) 351, 408
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 190, 290, 429
TaiI ACGT 2 cut(s) 212, 418
TaqI TCGA 2 cut(s) 221, 462
TaqII GACCGA 1 cut(s) 60
TasI AATT 1 cut(s) 468
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 271, 390, 422
TspGWI ACGGA 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 34
XmiI GTMKAC 2 cut(s) 330, 462
XmnI GAANNNNTTC 2 cut(s) 99, 278
XspI CTAG 2 cut(s) 351, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.