AT1G20070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015424
Physical Location & Seq
Reverse (-)
6958010 .. 6959148
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20070.1

Sequence Viewer

Length: 582 bp
ATGGAAACAATAGCAGTTCAAAATGCACCGGGTAAACAAGTTTCGGGTTTGAGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGAAGTTTGGCTCTTCCTCTTAATCCAACGTCGTCTTGGGGATCTTCTCCGGCATATCCGCCGCCGCATAGTTACTCTCAGCCTCCTCTTCTCCCTCTACCACGTGTCAACAGCTCAACTGTTCCTCTGCAACGCGTCAACAGCTCTCGACCACGTGTCAACAACAACTCTTCTCTCAATCGCGTTGCTCAGACAAAAGCTATTTCTGAAACACACATGAAGAAAGCAGAGTTCATCGAATCTGCGAGACTGACTCGAACCGGTTCAGTGCCGATCCAGGCGAACCAGTTGCGTGATTTTCCTGAAGGATTCGATGGCTACCCCGGTCCAGCGATCATGTTATTATCTCCGCCACCGAGTAGTTTGCCCATGCCTAGGTTTTCGATCAAACCGAAGCTTCGTTGCAACGTAGAAGCTGCTGGGAAAAGTGACGTAGCTACCAATAACATCCGGCGAGTTTTACAGCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

11.51

Isoelectric Point (pI)

69.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 243, 291
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 4 cut(s) 167, 170, 173, 458
AclWI GGATC 3 cut(s) 96, 157, 376
AcuI CTGAAG 1 cut(s) 432
AcvI CACGTG 2 cut(s) 212, 263
AfiI CCNNNNNNNGG 1 cut(s) 483
AflIII ACRYGT 3 cut(s) 211, 241, 262
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 3 cut(s) 20, 61, 99
AhdI GACNNNNNGTC 1 cut(s) 263
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 7 cut(s) 222, 252, 308, 505, 524, 545, 574
AluI AGCT 7 cut(s) 222, 252, 308, 505, 524, 545, 574
Alw26I GTCTC 2 cut(s) 46, 349
AlwI GGATC 3 cut(s) 96, 157, 376
Aor13HI TCCGGA 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 524
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 2 cut(s) 79, 370
AspA2I CCTAGG 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 2 cut(s) 30, 432
AvaII GGWCC 1 cut(s) 434
AvrII CCTAGG 1 cut(s) 482
BauI CACGAG 1 cut(s) 84
BbrPI CACGTG 2 cut(s) 212, 263
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 416
BcgI CGANNNNNNTGC 4 cut(s) 379, 413, 454, 488
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 2 cut(s) 30, 432
BcoDI GTCTC 2 cut(s) 46, 349
BfaI CTAG 1 cut(s) 483
BisI GCNGC 3 cut(s) 170, 173, 525
BlnI CCTAGG 1 cut(s) 482
BlsI GCNGC 3 cut(s) 171, 174, 526
Bme1390I CCNGG 3 cut(s) 30, 386, 432
Bme18I GGWCC 1 cut(s) 434
BmeRI GACNNNNNGTC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 30, 386, 432
BplI GAGNNNNNCTC 2 cut(s) 346, 378
BpuMI CCSGG 2 cut(s) 30, 432
BsaAI YACGTR 2 cut(s) 212, 263
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 430, 482
BsaWI WCCGGW 3 cut(s) 104, 368, 576
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 104
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 430, 482
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 200, 311
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 511
BseYI CCCAGC 1 cut(s) 527
Bsh1236I CGCG 2 cut(s) 243, 291
BshTI ACCGGT 1 cut(s) 368
BsiSI CCGG 7 cut(s) 29, 105, 158, 369, 432, 559, 577
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 2 cut(s) 46, 349
Bso31I GGTCTC 1 cut(s) 46
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 5 cut(s) 101, 149, 381, 441, 492
BspACI CCGC 4 cut(s) 167, 170, 173, 458
BspCNI CTCAG 2 cut(s) 199, 310
BspEI TCCGGA 1 cut(s) 104
BspFNI CGCG 2 cut(s) 243, 291
BspPI GGATC 3 cut(s) 96, 157, 376
BspQI GCTCTTC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 430, 482
BssMI GATC 5 cut(s) 101, 149, 381, 441, 492
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 126, 201, 283
BstBAI YACGTR 2 cut(s) 212, 263
BstDEI CTNAG 2 cut(s) 186, 297
BstF5I GGATG 1 cut(s) 555
BstFNI CGCG 2 cut(s) 243, 291
BstKTI GATC 5 cut(s) 104, 152, 384, 444, 495
BstMAI GTCTC 2 cut(s) 46, 349
BstMBI GATC 5 cut(s) 101, 149, 381, 441, 492
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 28, 384, 430
BstUI CGCG 2 cut(s) 243, 291
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 2 cut(s) 101, 149
BstYI RGATCY 2 cut(s) 101, 149
BtsCI GGATG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 232
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 3 cut(s) 325, 445, 478
DdeI CTNAG 2 cut(s) 186, 297
DpnI GATC 5 cut(s) 103, 151, 383, 443, 494
DpnII GATC 5 cut(s) 101, 149, 381, 441, 492
DriI GACNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 126, 201, 283
Eam1105I GACNNNNNGTC 1 cut(s) 263
EarI CTCTTC 3 cut(s) 126, 201, 283
EciI GGCGGA 2 cut(s) 156, 447
Eco130I CCWWGG 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 432
Eco72I CACGTG 2 cut(s) 212, 263
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 3 cut(s) 328, 448, 481
FaiI YATR 5 cut(s) 163, 177, 326, 446, 479
FatI CATG 3 cut(s) 324, 444, 477
Fnu4HI GCNGC 3 cut(s) 170, 173, 525
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 170, 173, 525
FspBI CTAG 1 cut(s) 483
GluI GCNGC 3 cut(s) 170, 173, 525
GsaI CCCAGC 1 cut(s) 531
HapII CCGG 7 cut(s) 29, 105, 158, 369, 432, 559, 577
HgaI GACGC 1 cut(s) 232
Hin1II CATG 3 cut(s) 328, 448, 481
HincII GTYRAC 3 cut(s) 217, 247, 268
HindII GTYRAC 3 cut(s) 217, 247, 268
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 347, 361, 417
HpaII CCGG 7 cut(s) 29, 105, 158, 369, 432, 559, 577
Hpy166II GTNNAC 4 cut(s) 35, 217, 247, 268
Hpy188I TCNGA 2 cut(s) 300, 316
Hpy188III TCNNGA 5 cut(s) 61, 99, 105, 255, 410
Hpy8I GTNNAC 4 cut(s) 35, 217, 247, 268
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 69, 407
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 5 cut(s) 137, 211, 262, 516, 540
HpyCH4V TGCA 3 cut(s) 26, 238, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 186, 297
HpySE526I ACGT 5 cut(s) 137, 211, 262, 516, 540
Hsp92II CATG 3 cut(s) 328, 448, 481
Kpn2I TCCGGA 1 cut(s) 104
Kzo9I GATC 5 cut(s) 101, 149, 381, 441, 492
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 1 cut(s) 511
MaeI CTAG 1 cut(s) 483
MaeII ACGT 5 cut(s) 137, 211, 262, 516, 540
MaeIII GTNAC 2 cut(s) 179, 536
MalI GATC 5 cut(s) 103, 151, 383, 443, 494
MboI GATC 5 cut(s) 101, 149, 381, 441, 492
MboII GAAGA 5 cut(s) 113, 144, 188, 270, 340
MflI RGATCY 2 cut(s) 101, 149
MluI ACGCGT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 6 cut(s) 101, 135, 201, 204, 213, 243
MroI TCCGGA 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 79, 370
MseI TTAA 1 cut(s) 129
MspI CCGG 7 cut(s) 29, 105, 158, 369, 432, 559, 577
MspR9I CCNGG 3 cut(s) 30, 386, 432
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 2 cut(s) 243, 291
MwoI GCNNNNNNNGC 1 cut(s) 249
NciI CCSGG 2 cut(s) 30, 432
NdeII GATC 5 cut(s) 101, 149, 381, 441, 492
NlaIII CATG 3 cut(s) 328, 448, 481
NmuCI GTSAC 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PdmI GAANNNNTTC 2 cut(s) 79, 370
PfeI GAWTC 2 cut(s) 347, 417
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 3 cut(s) 171, 174, 526
PleI GAGTC 1 cut(s) 355
PmaCI CACGTG 2 cut(s) 212, 263
PmlI CACGTG 2 cut(s) 212, 263
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 2 cut(s) 212, 263
Psp6I CCWGG 1 cut(s) 384
PspCI CACGTG 2 cut(s) 212, 263
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 384
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 2 cut(s) 101, 149
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 170, 173, 525
Sau3AI GATC 5 cut(s) 101, 149, 381, 441, 492
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 30, 386, 432
SinI GGWCC 1 cut(s) 434
SsiI CCGC 4 cut(s) 167, 170, 173, 458
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 3 cut(s) 28, 384, 430
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 5 cut(s) 140, 214, 265, 519, 543
TaqI TCGA 5 cut(s) 256, 345, 364, 420, 491
TauI GCSGC 2 cut(s) 172, 175
TfiI GAWTC 2 cut(s) 347, 417
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 331, 341
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmaJI CCTAGG 1 cut(s) 482
XmnI GAANNNNTTC 2 cut(s) 79, 370
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.