Rorug06G0319700

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
47161434 .. 47161604
171 bp
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UTR
Exon/CDS
Intron
Rorug06G0319700.1

Sequence Viewer

Length: 171 bp
ATGACTTTTCGTGTATCTCATATTTTTCGTGAAGGTAATAAGGTAGCTGATGCTTTGGCGAATTATGGTACGACTGCTCCTAATATGGTGTGGTGGGATGCTCCACCATCTTTTCTTTTATCGCATTGTCAGAGTGACCAATTGAGTTTTCCCCAATTTCGGTTACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.46

Weight (kDa)

8.0

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
BccI CCATC 1 cut(s) 115
BmsI GCATC 2 cut(s) 40, 88
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 103
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
CviQI GTAC 1 cut(s) 69
FaiI YATR 3 cut(s) 21, 66, 86
FokI GGATG 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 82, 106
LweI GCATC 2 cut(s) 40, 88
MaeIII GTNAC 2 cut(s) 134, 162
MfeI CAATTG 1 cut(s) 140
MluCI AATT 3 cut(s) 61, 140, 155
MunI CAATTG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 134
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SetI ASST 3 cut(s) 37, 45, 49
SfaNI GCATC 2 cut(s) 40, 88
SgeI CNNG 2 cut(s) 23, 41
Sse9I AATT 3 cut(s) 61, 140, 155
TasI AATT 3 cut(s) 61, 140, 155
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.