pycom15g00890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015424
Physical Location & Seq
Reverse (-)
468832 .. 469287
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00890.1

Sequence Viewer

Length: 456 bp
ATGAAAACTGTTGTTGTAGAGCAACCAATCTCTGCCTGCAAGCAGATGAAAATGGTGAGAAGAAGCTCTGAAAATCTTGCTCCCATAAATTACAACTTCCATGGAGGTCTCCTCCAAGCTCCTCCACCTTCTCTCTCTCTCTTCAACCACTACCGCTACCAACATCTTCAACAAGCGCAGAGGCAGCAGCATCAAAATCCACCTCTCCTTCCTCTACCGGTTCCCAACAGACCTCCTCATCACCACCGGTCTCTTCCATCGCGCACTCGCGGCGCCTCCCGCCCTCCCGCCGCCAGGAAGACCAACAACATGATCACCAGAAGCCAATCTCTCACCCCGAAAAAGCCGAAATCTAAGCCCTCCAAGAAAGAAGAAGCTAATAAGCAGGACTTCAAAGCCATATCTGAGTGTTTGATCGATCGCTTCCACCAACCGTTTAGGTCCCGATCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

11.02

Isoelectric Point (pI)

90.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 2 cut(s) 262, 270
AciI CCGC 5 cut(s) 154, 270, 280, 288, 291
AclWI GGATC 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 294
AgeI ACCGGT 2 cut(s) 217, 246
AgsI TTSAA 3 cut(s) 145, 170, 394
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 3 cut(s) 66, 119, 377
AluI AGCT 3 cut(s) 66, 119, 377
Alw26I GTCTC 2 cut(s) 113, 255
AlwI GGATC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 184, 187
AsiGI ACCGGT 2 cut(s) 217, 246
AspLEI GCGC 3 cut(s) 178, 264, 275
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 4 cut(s) 67, 233, 307, 325
AvaII GGWCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 196, 199
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 295
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 113, 255
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 4 cut(s) 185, 188, 271, 291
BlsI GCNGC 4 cut(s) 186, 189, 272, 292
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 3 cut(s) 222, 274, 443
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bsa29I ATCGAT 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 2 cut(s) 113, 255
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 2 cut(s) 217, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse118I RCCGGY 2 cut(s) 217, 246
BseBI CCWGG 1 cut(s) 295
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 396
BseRI GAGGAG 3 cut(s) 101, 111, 225
BseXI GCAGC 2 cut(s) 196, 199
Bsh1236I CGCG 2 cut(s) 262, 270
Bsh1285I CGRYCG 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 272
BshTI ACCGGT 2 cut(s) 217, 246
BshVI ATCGAT 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 218, 247
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 113, 255
BsmFI GGGAC 1 cut(s) 427
Bso31I GGTCTC 2 cut(s) 113, 255
Bsp143I GATC 4 cut(s) 312, 414, 418, 446
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 5 cut(s) 154, 270, 280, 288, 291
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 2 cut(s) 262, 270
BspLI GGNNCC 3 cut(s) 222, 274, 443
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 113, 255
BsrFI RCCGGY 2 cut(s) 217, 246
BssAI RCCGGY 2 cut(s) 217, 246
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 4 cut(s) 312, 414, 418, 446
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 10, 435
Bst6I CTCTTC 2 cut(s) 146, 258
BstACI GRCGYC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 37, 41
BstDEI CTNAG 2 cut(s) 354, 405
BstDSI CCRYGG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 262, 270
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 3 cut(s) 178, 264, 275
BstKTI GATC 4 cut(s) 315, 417, 421, 449
BstMAI GTCTC 2 cut(s) 113, 255
BstMBI GATC 4 cut(s) 312, 414, 418, 446
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 3 cut(s) 184, 270, 279
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 2 cut(s) 262, 270
BstV1I GCAGC 2 cut(s) 196, 199
BstV2I GAAGAC 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 37, 41
CfoI GCGC 3 cut(s) 178, 264, 275
Cfr10I RCCGGY 2 cut(s) 217, 246
Cfr13I GGNCC 1 cut(s) 441
ClaI ATCGAT 1 cut(s) 417
CspAI ACCGGT 2 cut(s) 217, 246
CviAII CATG 2 cut(s) 101, 310
CviJI RGCY 7 cut(s) 66, 119, 324, 346, 358, 377, 398
CviKI_1 RGCY 7 cut(s) 66, 119, 324, 346, 358, 377, 398
DdeI CTNAG 2 cut(s) 354, 405
DinI GGCGCC 1 cut(s) 274
DpnI GATC 4 cut(s) 314, 416, 420, 448
DpnII GATC 4 cut(s) 312, 414, 418, 446
Eam1104I CTCTTC 2 cut(s) 146, 258
EarI CTCTTC 2 cut(s) 146, 258
Eco130I CCWWGG 1 cut(s) 100
Eco31I GGTCTC 2 cut(s) 113, 255
Eco47I GGWCC 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 104, 313
FaiI YATR 4 cut(s) 86, 102, 311, 401
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 100, 309
FauI CCCGC 2 cut(s) 287, 295
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 185, 188, 271, 291
Fsp4HI GCNGC 4 cut(s) 185, 188, 271, 291
GlaI GCGC 3 cut(s) 177, 263, 274
GluI GCNGC 4 cut(s) 185, 188, 271, 291
HaeII RGCGCY 1 cut(s) 276
HapII CCGG 2 cut(s) 218, 247
HhaI GCGC 3 cut(s) 178, 264, 275
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 104, 313
Hin6I GCGC 3 cut(s) 176, 262, 273
HinP1I GCGC 3 cut(s) 176, 262, 273
HpaII CCGG 2 cut(s) 218, 247
HphI GGTGA 4 cut(s) 67, 233, 307, 325
Hpy188I TCNGA 3 cut(s) 70, 406, 451
Hpy188III TCNNGA 1 cut(s) 444
HpyAV CCTTC 2 cut(s) 138, 218
HpyCH4III ACNGT 2 cut(s) 10, 435
HpyCH4V TGCA 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 270, 279
HpyF3I CTNAG 2 cut(s) 354, 405
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 104, 313
HspAI GCGC 3 cut(s) 176, 262, 273
KasI GGCGCC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 4 cut(s) 312, 414, 418, 446
LmnI GCTCC 2 cut(s) 85, 124
LpnPI CCDG 7 cut(s) 49, 231, 260, 280, 307, 331, 371
Lsp1109I GCAGC 2 cut(s) 196, 199
LweI GCATC 1 cut(s) 199
MalI GATC 4 cut(s) 314, 416, 420, 448
MboI GATC 4 cut(s) 312, 414, 418, 446
MboII GAAGA 6 cut(s) 72, 133, 158, 245, 310, 383
MluCI AATT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 273
MspI CCGG 2 cut(s) 218, 247
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 2 cut(s) 262, 270
MwoI GCNNNNNNNGC 3 cut(s) 184, 270, 279
NarI GGCGCC 1 cut(s) 273
NcoI CCATGG 1 cut(s) 100
NdeII GATC 4 cut(s) 312, 414, 418, 446
NlaIII CATG 2 cut(s) 104, 313
NlaIV GGNNCC 3 cut(s) 222, 274, 443
PinAI ACCGGT 2 cut(s) 217, 246
PkrI GCNGC 4 cut(s) 186, 189, 272, 292
Ple19I CGATCG 1 cut(s) 421
PluTI GGCGCC 1 cut(s) 276
PpuMI RGGWCCY 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 3 cut(s) 222, 274, 443
PspPI GGNCC 1 cut(s) 441
PspPPI RGGWCCY 1 cut(s) 441
PvuI CGATCG 1 cut(s) 421
SatI GCNGC 4 cut(s) 185, 188, 271, 291
Sau3AI GATC 4 cut(s) 312, 414, 418, 446
Sau96I GGNCC 1 cut(s) 441
ScrFI CCNGG 1 cut(s) 295
SetI ASST 8 cut(s) 68, 109, 121, 130, 205, 235, 379, 443
SfaNI GCATC 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 274
SinI GGWCC 1 cut(s) 441
Sse9I AATT 1 cut(s) 88
SsiI CCGC 5 cut(s) 154, 270, 280, 288, 291
SspDI GGCGCC 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 10, 435
TaqI TCGA 1 cut(s) 417
TasI AATT 1 cut(s) 88
TauI GCSGC 2 cut(s) 273, 293
TseI GCWGC 2 cut(s) 184, 187
TspDTI ATGAA 2 cut(s) 17, 62
VpaK11BI GGWCC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.