Rh6CG446100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015424
Physical Location & Seq
Forward (+)
62424124 .. 62446702
22579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG446100.1

Sequence Viewer

Length: 861 bp
ATGTTGCTCCAACAACAGTTTCTTCAACCACAGCAGCAACCGCCTCTGCTTCCTCTGCCGGTTTCAAAACCCCTACACCAGTCTCTCCCATCTCGTACTCGAAGCCTCTCCCGCCCTCCCACCGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTGACTCCAAAGAAGCCAAAGTCGAAACAATCCAAGAAGGAAGACATTAATTCCATGCCTGCAGACTGCTTCATCATTGCTTCCACCACCCGTTTGGGACCCGATCCAAATGATCTCCCTAAAGATGTCACTAAGGTGTTGTCATCTTCATCGGGTAAGACTACTCTTATTGGTAGTGTTGGAGTTGGAGAACACAAGGACAATTTTTCAAGTTCCATTTTCACTCTCGCACCACCTCCGAGTAGCTTGCCCCTGCCGAGGTTTTCTCTGAAACCGCCGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCGGAGCAACGGACAATCTCTGCCGTCTTCTACGTCTCCGTTATATTGACCAGAATCATGGAAGCATTGCTCTTGCCAAGAACTCCAGACTATCACCTCTGCCTCCAGAACGTGCTGGTTTCAATTATGGTATTGGTGAAACCGTTGATATACCTATTGATGGAAGTGGGGATTTGAAAAAGAGGGAGAGGGAACTCCAAGCTAAAGAAGCTGAACTGAGAAAGTGTGAAGAGATTGTAAAACGGAAAGAGGATGCTGCAGCACGAGATGGTCGACTTCGGCATGCTTTCATTGGCTTAGGATTTCAAGAAAGAACAGAAGCTTATGATTTTCAAGCAGCCCTGCATGATCACATGAAGATCACAGTAATCGATCATTGGAGATTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

286

Amino Acids

31.74

Weight (kDa)

9.78

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1681 PF07933 246 - 277 6.5e-08 Protein of unknown function (DUF1681)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 742
AciI CCGC 4 cut(s) 41, 112, 123, 431
AclWI GGATC 1 cut(s) 254
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 414, 629
AgsI TTSAA 8 cut(s) 26, 66, 366, 592, 646, 776, 803, 856
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 5 cut(s) 402, 455, 671, 680, 791
AluI AGCT 5 cut(s) 402, 455, 671, 680, 791
Alw26I GTCTC 2 cut(s) 87, 509
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 455
ApeKI GCWGC 4 cut(s) 34, 725, 728, 806
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 555, 617
AvaII GGWCC 1 cut(s) 254
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 2 cut(s) 204, 488
BbvI GCAGC 4 cut(s) 46, 712, 740, 818
BccI CCATC 3 cut(s) 97, 623, 731
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BclI TGATCA 1 cut(s) 817
BcoDI GTCTC 2 cut(s) 87, 509
BfmI CTRYAG 2 cut(s) 216, 726
BisI GCNGC 4 cut(s) 35, 726, 729, 807
BlsI GCNGC 4 cut(s) 36, 727, 730, 808
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 255, 256
BmsI GCATC 3 cut(s) 431, 457, 712
BpiI GAAGAC 2 cut(s) 204, 488
BplI GAGNNNNNCTC 2 cut(s) 406, 438
BpmI CTGGAG 2 cut(s) 538, 558
Bpu10I CCTNAGC 1 cut(s) 766
Bsa29I ATCGAT 1 cut(s) 840
BsaJI CCNNGG 2 cut(s) 413, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 629
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 231, 534
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 2 cut(s) 413, 434
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 2 cut(s) 414, 629
BseMI GCAATG 2 cut(s) 231, 534
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 4 cut(s) 46, 712, 740, 818
BshVI ATCGAT 1 cut(s) 840
BsiSI CCGG 2 cut(s) 59, 471
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 414, 629
BsmAI GTCTC 2 cut(s) 87, 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 259, 268, 817, 828, 841
BspACI CCGC 4 cut(s) 41, 112, 123, 431
BspCNI CTCAG 1 cut(s) 678
BspDI ATCGAT 1 cut(s) 840
BspLI GGNNCC 2 cut(s) 255, 256
BspMAI CTGCAG 2 cut(s) 220, 730
BspPI GGATC 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 231, 534
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 413, 434
BssMI GATC 5 cut(s) 259, 268, 817, 828, 841
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst4CI ACNGT 3 cut(s) 18, 613, 835
Bst6I CTCTTC 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 216, 404, 753
BstDEI CTNAG 3 cut(s) 288, 686, 766
BstF5I GGATG 1 cut(s) 727
BstKTI GATC 5 cut(s) 262, 271, 820, 831, 844
BstMAI GTCTC 2 cut(s) 87, 509
BstMBI GATC 5 cut(s) 259, 268, 817, 828, 841
BstMWI GCNNNNNNNGC 4 cut(s) 40, 55, 111, 677
BstNSI RCATGY 1 cut(s) 755
BstSFI CTRYAG 2 cut(s) 216, 726
BstV1I GCAGC 4 cut(s) 46, 712, 740, 818
BstV2I GAAGAC 2 cut(s) 204, 488
BstXI CCANNNNNNTGG 2 cut(s) 250, 527
Bsu15I ATCGAT 1 cut(s) 840
BsuTUI ATCGAT 1 cut(s) 840
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 727
Cac8I GCNNGC 3 cut(s) 216, 404, 753
CaiI CAGNNNCTG 1 cut(s) 455
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 1 cut(s) 96
CviAII CATG 5 cut(s) 211, 527, 752, 815, 823
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 3 cut(s) 288, 686, 766
DpnI GATC 5 cut(s) 261, 270, 819, 830, 843
DpnII GATC 5 cut(s) 259, 268, 817, 828, 841
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 5 cut(s) 214, 530, 755, 818, 826
FaiI YATR 9 cut(s) 212, 513, 528, 597, 620, 753, 795, 816, 824
FaqI GGGAC 1 cut(s) 267
FatI CATG 5 cut(s) 210, 526, 751, 814, 822
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 35, 726, 729, 807
FokI GGATG 1 cut(s) 734
Fsp4HI GCNGC 4 cut(s) 35, 726, 729, 807
GluI GCNGC 4 cut(s) 35, 726, 729, 807
GsuI CTGGAG 2 cut(s) 538, 558
HapII CCGG 2 cut(s) 59, 471
Hin1II CATG 5 cut(s) 214, 530, 755, 818, 826
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 3 cut(s) 160, 523, 852
HpaII CCGG 2 cut(s) 59, 471
HphI GGTGA 2 cut(s) 555, 617
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 2 cut(s) 396, 426
Hpy188III TCNNGA 3 cut(s) 555, 575, 776
Hpy8I GTNNAC 1 cut(s) 743
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 18, 613, 835
HpyCH4IV ACGT 2 cut(s) 502, 580
HpyCH4V TGCA 4 cut(s) 218, 444, 728, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 55, 111, 677
HpyF3I CTNAG 3 cut(s) 288, 686, 766
HpySE526I ACGT 2 cut(s) 502, 580
Hsp92II CATG 5 cut(s) 214, 530, 755, 818, 826
KflI GGGWCCC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 5 cut(s) 259, 268, 817, 828, 841
LmnI GCTCC 2 cut(s) 12, 473
Lsp1109I GCAGC 4 cut(s) 46, 712, 740, 818
LweI GCATC 3 cut(s) 431, 457, 712
MaeII ACGT 2 cut(s) 502, 580
MaeIII GTNAC 1 cut(s) 283
MalI GATC 5 cut(s) 261, 270, 819, 830, 843
MboI GATC 5 cut(s) 259, 268, 817, 828, 841
MboII GAAGA 6 cut(s) 14, 209, 294, 488, 710, 838
MluCI AATT 4 cut(s) 205, 358, 592, 856
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 3 cut(s) 34, 316, 322
MseI TTAA 2 cut(s) 204, 859
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 2 cut(s) 59, 471
MwoI GCNNNNNNNGC 4 cut(s) 40, 55, 111, 677
NdeII GATC 5 cut(s) 259, 268, 817, 828, 841
NlaIII CATG 5 cut(s) 214, 530, 755, 818, 826
NlaIV GGNNCC 2 cut(s) 255, 256
NmeAIII GCCGAG 2 cut(s) 438, 459
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 755
OliI CACNNNNGTG 1 cut(s) 290
PaeI GCATGC 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 739
PfeI GAWTC 2 cut(s) 523, 852
PkrI GCNGC 4 cut(s) 36, 727, 730, 808
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 255, 256
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
PstI CTGCAG 2 cut(s) 220, 730
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 741
SaqAI TTAA 2 cut(s) 204, 859
SatI GCNGC 4 cut(s) 35, 726, 729, 807
Sau3AI GATC 5 cut(s) 259, 268, 817, 828, 841
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 154
SfaNI GCATC 3 cut(s) 431, 457, 712
SfcI CTRYAG 2 cut(s) 216, 726
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 290
SphI GCATGC 1 cut(s) 755
Sse9I AATT 4 cut(s) 205, 358, 592, 856
SsiI CCGC 4 cut(s) 41, 112, 123, 431
TaaI ACNGT 3 cut(s) 18, 613, 835
TaiI ACGT 2 cut(s) 505, 583
TaqI TCGA 4 cut(s) 100, 179, 742, 840
TasI AATT 4 cut(s) 205, 358, 592, 856
TfiI GAWTC 2 cut(s) 523, 852
Tru1I TTAA 2 cut(s) 204, 859
Tru9I TTAA 2 cut(s) 204, 859
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 4 cut(s) 34, 725, 728, 806
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 217, 294, 748, 839
TspGWI ACGGA 3 cut(s) 494, 497, 727
VpaK11BI GGWCC 1 cut(s) 254
VspI ATTAAT 1 cut(s) 204
XceI RCATGY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.