Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015424

Physical Location & Seq

Genomic Coordinates Reverse (-)

67697674 .. 67698180

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG469100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAGCAACAGTTTCTTCAACCACAGCAGCAACCGCCTCTGCTTCCTCTGCCGGTTTCAAAACCACTACACCAGTCTCTCCCATCTCGTACTCGAAGCCTCTCCCGCCCTCCCACAGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTGACTCCAAAGAAGCCAAAGTCGAAACAATCCAAGAAGGAAGACATTAATTCCATGCCTGCAGACTGCTTCATCATTGCTTCCACCACCCGTTTGGGACCCGATCCAAATGATCTCCCTAAAGATGTCACTAAGGTGTTGTCATCTTCATCGGGTAAGACTACTCTTATTGGTAGTGTTGGAGTTGGAGAACACAAGGACAATTTTTCAAGTTCCATTTTCACTCTCGCACCACCTCCGAGTAGCTTGCCCCTGCCGAGGTTTTCTCTGAAACCGCCGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCGGAGCAACGGACAATCTATGCCGTCTTCTACGTCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

168

Amino Acids

18.27

Weight (kDa)

10.51

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20070
fragaria_vesca	FvH4_2g38210
prunus_persica	Prupe.1G363100_v2.0.a1
pyrus_communis	pycom08g00900 pycom15g00890
rosa_chinensis	RchiOBHm_Chr6g0303181
rosa_laevigata	RLG00000011099
rosa_multiflora	Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164950
rosa_rugosa	Rorug06G0319700
rosa_samantha	Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana	Rw6G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 106, 425
AclWI	GGATC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	20, 60, 360
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	396, 449
AluI	AGCT	2 cut(s)	396, 449
Alw26I	GTCTC	2 cut(s)	81, 503
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	4, 28
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	198, 482
BbvI	GCAGC	2 cut(s)	16, 40
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcoDI	GTCTC	2 cut(s)	81, 503
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	5, 29
BlsI	GCNGC	2 cut(s)	6, 30
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	249, 250
BmsI	GCATC	2 cut(s)	425, 451
BpiI	GAAGAC	2 cut(s)	198, 482
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BsaJI	CCNNGG	2 cut(s)	407, 428
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	407, 428
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	16, 40
BsiSI	CCGG	3 cut(s)	53, 465, 502
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	81, 503
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	253, 262
BspACI	CCGC	3 cut(s)	35, 106, 425
BspLI	GGNNCC	2 cut(s)	249, 250
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	407, 428
BssMI	GATC	2 cut(s)	253, 262
Bst4CI	ACNGT	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	210, 398
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	256, 265
BstMAI	GTCTC	2 cut(s)	81, 503
BstMBI	GATC	2 cut(s)	253, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 49, 105
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	16, 40
BstV2I	GAAGAC	2 cut(s)	198, 482
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	210, 398
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	99, 119, 144, 166, 396, 449
CviKI_1	RGCY	6 cut(s)	99, 119, 144, 166, 396, 449
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	255, 264
DpnII	GATC	2 cut(s)	253, 262
Eco47I	GGWCC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	206, 484
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	5, 29
Fsp4HI	GCNGC	2 cut(s)	5, 29
GluI	GCNGC	2 cut(s)	5, 29
HapII	CCGG	3 cut(s)	53, 465, 502
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	3 cut(s)	53, 465, 502
Hpy188I	TCNGA	2 cut(s)	390, 420
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	4, 212, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 49, 105
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	1 cut(s)	208
KflI	GGGWCCC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	253, 262
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	8 cut(s)	66, 86, 133, 151, 164, 222, 416, 478
Lsp1109I	GCAGC	2 cut(s)	16, 40
LweI	GCATC	2 cut(s)	425, 451
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	255, 264
MboI	GATC	2 cut(s)	253, 262
MboII	GAAGA	4 cut(s)	8, 203, 288, 482
MluCI	AATT	2 cut(s)	199, 352
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	310, 316
MnlI	CCTC	7 cut(s)	48, 57, 110, 120, 396, 402, 423
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	3 cut(s)	53, 465, 502
MwoI	GCNNNNNNNGC	3 cut(s)	34, 49, 105
NdeII	GATC	2 cut(s)	253, 262
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	249, 250
NmeAIII	GCCGAG	2 cut(s)	432, 453
NmuCI	GTSAC	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	6, 30
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	248
PshBI	ATTAAT	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	249, 250
PspPI	GGNCC	1 cut(s)	248
PspPPI	RGGWCCY	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	5, 29
Sau3AI	GATC	2 cut(s)	253, 262
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	148
SetI	ASST	6 cut(s)	288, 388, 398, 413, 451, 499
SfaNI	GCATC	2 cut(s)	425, 451
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	199, 352
SsiI	CCGC	3 cut(s)	35, 106, 425
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	94, 173
TasI	AATT	2 cut(s)	199, 352
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	4, 28
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	211, 288
TspGWI	ACGGA	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	248
VspI	ATTAAT	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.