pycom08g00900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015424
Physical Location & Seq
Reverse (-)
687628 .. 688293
666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00900.1

Sequence Viewer

Length: 666 bp
ATGGAAATGATGAGAAGAAGCTCTGAAAATCTTGCTCCCATAAATTACAACATCCATGGAGGTCTCCTCCAAGCTCCTCCACCTTGTCTTTCTGTGTTCAACCACCACCGCTACCAACATCTTCAACAAGCGCAAAGGCAGCAGCACCAACACCCGCCTCTCCTTCCTCTACCGGTTCCCAACAGACCACCTTTCCACCACCAGTCTCTGCCGTCTCTTCCGTTGCGTACTCGCGGCGCCTCCCATCCTCCCGCCACCAGGAAGACCAACAACATGATCACCAGAAGCCAATCTCTCACGCCGAAAAAGCCGAAATCGTCTAAGCCCTCCGAGAAAGAAGAAGCTAATAAGCATGACTTCAAAGCGATAACCGAGTGTTCGGTCATCGCTTCCACCAGCCCTTTAGGGCCCGATCCGAATGATCTTCCCAAAGATGTTACTAGGGTTTTATCATCATCCATCGGTAAGAGTCTCGGTGGCCGCCGCGGTCGTGGTGTGGATATGGAGAAGTTTTCAGGTTCCATTTTCACTCTCTCGCCGCCTCCGAGTAGCTTGCCTCTGCCGAGGTTTTCTCTGCAGCCAAGGCTTGGTTGCAACGCTGAAGCTGCAGCAGGGGTTGACGCTGGAGCAACCGACAACCTCTGCCGTCTTCTACGTCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

222

Amino Acids

24.26

Weight (kDa)

10.32

Isoelectric Point (pI)

66.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 587
AccII CGCG 2 cut(s) 234, 486
AciI CCGC 8 cut(s) 109, 155, 234, 252, 481, 484, 486, 539
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 258, 587
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 3 cut(s) 100, 125, 361
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 5 cut(s) 21, 74, 344, 552, 605
AluI AGCT 5 cut(s) 21, 74, 344, 552, 605
Alw26I GTCTC 5 cut(s) 68, 210, 219, 476, 662
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 2 cut(s) 407, 478
ApaI GGGCCC 1 cut(s) 411
ApeKI GCWGC 5 cut(s) 139, 142, 577, 605, 608
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 2 cut(s) 133, 239
AspS9I GGNCC 2 cut(s) 407, 408
AsuHPI GGTGA 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 2 cut(s) 269, 641
BbvI GCAGC 5 cut(s) 151, 154, 589, 592, 620
BccI CCATC 2 cut(s) 252, 467
BceAI ACGGC 2 cut(s) 196, 630
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 1 cut(s) 259
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 5 cut(s) 68, 210, 219, 476, 662
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 2 cut(s) 575, 606
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 9 cut(s) 140, 143, 235, 481, 484, 539, 578, 606, 609
BlsI GCNGC 9 cut(s) 141, 144, 236, 482, 485, 540, 579, 607, 610
Bme1390I CCNGG 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 407, 408
BmiI GGNNCC 4 cut(s) 177, 238, 409, 520
BmrFI CCNGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 269, 641
BplI GAGNNNNNCTC 4 cut(s) 51, 83, 556, 588
BpmI CTGGAG 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 55, 484, 563, 581
BsaWI WCCGGW 2 cut(s) 172, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 587
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 55, 484, 563, 581
BseGI GGATG 3 cut(s) 51, 244, 455
BseLI CCNNNNNNNGG 2 cut(s) 258, 587
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 56, 66
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 5 cut(s) 151, 154, 589, 592, 620
Bsh1236I CGCG 2 cut(s) 234, 486
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 2 cut(s) 409, 480
BshNI GGYRCC 1 cut(s) 236
BshTI ACCGGT 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 490
BsiSI CCGG 2 cut(s) 173, 661
BslI CCNNNNNNNGG 2 cut(s) 258, 587
BsmAI GTCTC 5 cut(s) 68, 210, 219, 476, 662
BsmBI CGTCTC 2 cut(s) 219, 662
BsnI GGCC 2 cut(s) 409, 480
Bso31I GGTCTC 1 cut(s) 68
Bsp120I GGGCCC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 3 cut(s) 276, 412, 421
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 8 cut(s) 109, 155, 234, 252, 481, 484, 486, 539
BspANI GGCC 2 cut(s) 409, 480
BspFNI CGCG 2 cut(s) 234, 486
BspLI GGNNCC 4 cut(s) 177, 238, 409, 520
BspMAI CTGCAG 2 cut(s) 579, 610
BspPI GGATC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 55, 484, 563, 581
BssMI GATC 3 cut(s) 276, 412, 421
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 55, 581
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 2 cut(s) 55, 484
BstF5I GGATG 3 cut(s) 51, 244, 455
BstFNI CGCG 2 cut(s) 234, 486
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 133, 239
BstKTI GATC 3 cut(s) 279, 415, 424
BstMAI GTCTC 5 cut(s) 68, 210, 219, 476, 662
BstMBI GATC 3 cut(s) 276, 412, 421
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 139, 307, 583, 605
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 2 cut(s) 575, 606
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 2 cut(s) 234, 486
BstV1I GCAGC 5 cut(s) 151, 154, 589, 592, 620
BstV2I GAAGAC 2 cut(s) 269, 641
BsuRI GGCC 2 cut(s) 409, 480
BtgI CCRYGG 2 cut(s) 55, 484
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 3 cut(s) 51, 244, 455
Cac8I GCNNGC 1 cut(s) 554
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 2 cut(s) 133, 239
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 407, 408
Cfr42I CCGCGG 1 cut(s) 487
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 3 cut(s) 56, 274, 353
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 321
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 278, 414, 423
DpnII GATC 3 cut(s) 276, 412, 421
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 55, 581
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 2 cut(s) 55, 581
EcoT38I GRGCYC 1 cut(s) 411
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 55, 581
Esp3I CGTCTC 2 cut(s) 219, 662
FaeI CATG 3 cut(s) 59, 277, 356
FaiI YATR 5 cut(s) 41, 57, 275, 354, 503
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 3 cut(s) 55, 273, 352
FauI CCCGC 2 cut(s) 162, 259
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 9 cut(s) 140, 143, 235, 481, 484, 539, 578, 606, 609
FokI GGATG 3 cut(s) 38, 231, 442
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 9 cut(s) 140, 143, 235, 481, 484, 539, 578, 606, 609
FspBI CTAG 1 cut(s) 441
GlaI GCGC 2 cut(s) 132, 238
GluI GCNGC 9 cut(s) 140, 143, 235, 481, 484, 539, 578, 606, 609
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 409, 480
HapII CCGG 2 cut(s) 173, 661
HgaI GACGC 1 cut(s) 629
HhaI GCGC 2 cut(s) 133, 239
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 3 cut(s) 59, 277, 356
Hin6I GCGC 2 cut(s) 131, 237
HinP1I GCGC 2 cut(s) 131, 237
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 1 cut(s) 469
HpaII CCGG 2 cut(s) 173, 661
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 4 cut(s) 25, 331, 417, 546
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 655
HpyCH4V TGCA 3 cut(s) 577, 594, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 307, 583, 605
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 655
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 3 cut(s) 59, 277, 356
HspAI GCGC 2 cut(s) 131, 237
KasI GGCGCC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 276
KspI CCGCGG 1 cut(s) 487
Kzo9I GATC 3 cut(s) 276, 412, 421
LmnI GCTCC 3 cut(s) 40, 79, 626
LpnPI CCDG 9 cut(s) 186, 215, 244, 271, 295, 409, 501, 597, 609
Lsp1109I GCAGC 5 cut(s) 151, 154, 589, 592, 620
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 655
MaeIII GTNAC 1 cut(s) 436
MalI GATC 3 cut(s) 278, 414, 423
MboI GATC 3 cut(s) 276, 412, 421
MboII GAAGA 7 cut(s) 27, 113, 209, 274, 350, 416, 641
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 43
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 2 cut(s) 173, 661
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 2 cut(s) 234, 486
MwoI GCNNNNNNNGC 4 cut(s) 139, 307, 583, 605
NarI GGCGCC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 55
NdeII GATC 3 cut(s) 276, 412, 421
NlaIII CATG 3 cut(s) 59, 277, 356
NlaIV GGNNCC 4 cut(s) 177, 238, 409, 520
NmeAIII GCCGAG 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 587
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 9 cut(s) 141, 144, 236, 482, 485, 540, 579, 607, 610
PleI GAGTC 1 cut(s) 477
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 4 cut(s) 177, 238, 409, 520
PspOMI GGGCCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 407, 408
PstI CTGCAG 2 cut(s) 579, 610
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 487
SatI GCNGC 9 cut(s) 140, 143, 235, 481, 484, 539, 578, 606, 609
Sau3AI GATC 3 cut(s) 276, 412, 421
Sau96I GGNCC 2 cut(s) 407, 408
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 411
SfcI CTRYAG 2 cut(s) 575, 606
SfoI GGCGCC 1 cut(s) 238
Sfr303I CCGCGG 1 cut(s) 487
SgrBI CCGCGG 1 cut(s) 487
Sse9I AATT 1 cut(s) 43
SsiI CCGC 8 cut(s) 109, 155, 234, 252, 481, 484, 486, 539
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 2 cut(s) 55, 581
TaiI ACGT 1 cut(s) 658
TaqII GACCGA 1 cut(s) 370
TasI AATT 1 cut(s) 43
TauI GCSGC 4 cut(s) 237, 483, 486, 541
TseI GCWGC 5 cut(s) 139, 142, 577, 605, 608
TspGWI ACGGA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 587
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.