RchiOBHm_Chr6g0303181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015424
Physical Location & Seq
Forward (+)
63008330 .. 63009701
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27235

Sequence Viewer

Length: 705 bp
ATGGCTATGGAGGCTGTTGCTTTAGACCGGTCGATGTCTTCCTGCAAGCAAATTAGAATGATGATGGCAAGAAGAAGCTTTTCTTCCTCTGAAAATGTTGCTCCAAGTATGAACTTCCATGGAGGTCTCTTGCAGGCTCCTCATGCTCATCCTCCTCCCTCATTCTCCTCCTTTAACCCCTCCCTCTTCAATCATTATATGCAGCAACAGTTTCTTCAACCACAGCAGCAACCACCTCTGCTTCCTCTGCCGGTTTCAAAACCCCTACACCAGTCTCTCCCATCTCGTACTCGAAGCCTCTCCCGCCCTCCCACCGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTGACTCCAAAGAAGCCAAAGTCGAAACAATCCAAGAAGGAAGACATTAATTCCATGCCTGCAGACTGCTTCATCATTGCTTCCACCACCCGTTTGGGACCCGATCCAAATGATCTCCCTAAAGATGTCACTAAGGTGTTGTCATCTTCATCGGGTAAGACTACTCTTATTGGTAGTGTTGGAGTTGGAGAACACAAGGACAATTTTTCAAGTTCCATTTTCACTCTCGCACCACCTCCGAGTAGCTTGCCCCTGCCGAGGTTTTCTCTGAAACCGCCGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCGGAGCAACGGACAATCTCTGCCGTCTTCTACGTCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

234

Amino Acids

25.58

Weight (kDa)

10.44

Isoelectric Point (pI)

73.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 304, 315, 623
AclWI GGATC 1 cut(s) 446
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 606
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 4 cut(s) 190, 218, 258, 558
AleI CACNNNNGTG 1 cut(s) 482
AluBI AGCT 3 cut(s) 78, 594, 647
AluI AGCT 3 cut(s) 78, 594, 647
Alw26I GTCTC 3 cut(s) 131, 279, 701
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 647
ApeKI GCWGC 2 cut(s) 202, 226
AseI ATTAAT 1 cut(s) 396
AsiGI ACCGGT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 446
AvaII GGWCC 1 cut(s) 446
BbsI GAAGAC 3 cut(s) 30, 396, 680
BbvI GCAGC 2 cut(s) 214, 238
BccI CCATC 2 cut(s) 58, 289
BceAI ACGGC 1 cut(s) 669
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BcoDI GTCTC 3 cut(s) 131, 279, 701
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 2 cut(s) 203, 227
BlsI GCNGC 2 cut(s) 204, 228
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 138, 447, 448
BmsI GCATC 2 cut(s) 623, 649
BpiI GAAGAC 3 cut(s) 30, 396, 680
BplI GAGNNNNNCTC 2 cut(s) 598, 630
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 118, 605, 626
BsaWI WCCGGW 2 cut(s) 27, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 2 cut(s) 27, 250
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 118, 605, 626
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 3 cut(s) 129, 144, 157
BseXI GCAGC 2 cut(s) 214, 238
Bsh1285I CGRYCG 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 4 cut(s) 28, 251, 663, 700
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 3 cut(s) 131, 279, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 451, 460
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 3 cut(s) 304, 315, 623
BspLI GGNNCC 3 cut(s) 138, 447, 448
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 2 cut(s) 27, 250
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 2 cut(s) 27, 250
BssECI CCNNGG 3 cut(s) 118, 605, 626
BssMI GATC 2 cut(s) 451, 460
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 4 cut(s) 47, 135, 408, 596
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 2 cut(s) 454, 463
BstMAI GTCTC 3 cut(s) 131, 279, 701
BstMBI GATC 2 cut(s) 451, 460
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 11, 143, 247, 303
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 214, 238
BstV2I GAAGAC 3 cut(s) 30, 396, 680
BstXI CCANNNNNNTGG 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 646
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 47, 135, 408, 596
CaiI CAGNNNCTG 1 cut(s) 647
Cfr10I RCCGGY 2 cut(s) 27, 250
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 3 cut(s) 119, 143, 403
CviJI RGCY 9 cut(s) 5, 14, 78, 137, 297, 342, 364, 594, 647
CviKI_1 RGCY 9 cut(s) 5, 14, 78, 137, 297, 342, 364, 594, 647
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 480
DpnI GATC 2 cut(s) 453, 462
DpnII GATC 2 cut(s) 451, 460
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 3 cut(s) 122, 146, 406
FaiI YATR 7 cut(s) 8, 110, 120, 144, 198, 200, 404
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 1 cut(s) 459
FatI CATG 3 cut(s) 118, 142, 402
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 203, 227
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 203, 227
GluI GCNGC 2 cut(s) 203, 227
HapII CCGG 4 cut(s) 28, 251, 663, 700
Hin1II CATG 3 cut(s) 122, 146, 406
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 1 cut(s) 352
HpaII CCGG 4 cut(s) 28, 251, 663, 700
Hpy188I TCNGA 3 cut(s) 91, 588, 618
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 5 cut(s) 45, 133, 202, 410, 636
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 143, 247, 303
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 3 cut(s) 122, 146, 406
KflI GGGWCCC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 451, 460
LmnI GCTCC 3 cut(s) 106, 142, 665
Lsp1109I GCAGC 2 cut(s) 214, 238
LweI GCATC 2 cut(s) 623, 649
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 453, 462
MboI GATC 2 cut(s) 451, 460
MboII GAAGA 8 cut(s) 30, 75, 84, 178, 206, 401, 486, 680
MluCI AATT 3 cut(s) 51, 397, 550
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 508, 514
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 2 cut(s) 174, 396
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 4 cut(s) 28, 251, 663, 700
MwoI GCNNNNNNNGC 4 cut(s) 11, 143, 247, 303
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 451, 460
NlaIII CATG 3 cut(s) 122, 146, 406
NlaIV GGNNCC 3 cut(s) 138, 447, 448
NmeAIII GCCGAG 2 cut(s) 630, 651
NmuCI GTSAC 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 79
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 204, 228
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 138, 447, 448
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 647
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 2 cut(s) 174, 396
SatI GCNGC 2 cut(s) 203, 227
Sau3AI GATC 2 cut(s) 451, 460
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 346
SetI ASST 9 cut(s) 80, 127, 238, 486, 586, 596, 611, 649, 697
SfaNI GCATC 2 cut(s) 623, 649
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 3 cut(s) 51, 397, 550
SsiI CCGC 3 cut(s) 304, 315, 623
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 697
TaqI TCGA 3 cut(s) 32, 292, 371
TasI AATT 3 cut(s) 51, 397, 550
Tru1I TTAA 2 cut(s) 174, 396
Tru9I TTAA 2 cut(s) 174, 396
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 202, 226
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 125, 409, 486
TspGWI ACGGA 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 446
VspI ATTAAT 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.