Rroxscaffold_7G00164950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015424
Physical Location & Seq
Reverse (-)
6854223 .. 6854926
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164950.1

Sequence Viewer

Length: 579 bp
ATGGCTATGGAGGCTGTTGCTTTAGACCGGTCGATGTCTTCCTGCAAGCAAATTAGAATGATGATGGCAAGAAGAAGCTTCCCTTCCTCTGAAAATGTTGCTCCAAGTATGAACTTCCATGGAGGTCTCTTGCAGGCTCCCTCATGCTCATCCTCCTCCATCATTCTCCTCCCTCTTCAATCATTATATGCAGCAACAGTTTCTTCAACCACAGCAGCAACCGCCTCTGCTTCCTCTGCCGGTTTCAAAACCACTACACCAGTCTCTCCCATCTCGTACTCGAAGCCTCTCCCGCCCTCCCACCGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTGACTCCAAAGAAGTCAAAGTCGAAACAATCCCAAGAAGGAAGACATTAATTCCATGCCTGCAGACTGCTTCATCATTGCTTCCACTAGCCGTTTGGGACCCGATCCAAATGATCTCCCTAAAGATGTCACTAAGGTGTTGTCATCTTCATCGGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCCGGAGCAACGGACAATCTCTGCCGTCTTCTACGTCTCCGGTGAACGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

192

Amino Acids

20.7

Weight (kDa)

10.05

Isoelectric Point (pI)

81.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 222, 293, 304
AclWI GGATC 1 cut(s) 436
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 572
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 179, 207, 247
AleI CACNNNNGTG 1 cut(s) 472
AluBI AGCT 2 cut(s) 78, 512
AluI AGCT 2 cut(s) 78, 512
Alw26I GTCTC 3 cut(s) 131, 268, 567
AlwI GGATC 1 cut(s) 436
AlwNI CAGNNNCTG 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 191, 215
AseI ATTAAT 1 cut(s) 386
AsiGI ACCGGT 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 529
AvaII GGWCC 1 cut(s) 436
BbsI GAAGAC 3 cut(s) 30, 386, 546
BbvI GCAGC 2 cut(s) 203, 227
BccI CCATC 3 cut(s) 58, 167, 278
BceAI ACGGC 2 cut(s) 413, 535
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 131, 268, 567
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 398
BisI GCNGC 2 cut(s) 192, 216
BlsI GCNGC 2 cut(s) 193, 217
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 138, 437, 438
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 2 cut(s) 488, 514
BpiI GAAGAC 3 cut(s) 30, 386, 546
BpuMI CCSGG 1 cut(s) 529
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 2 cut(s) 27, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse118I RCCGGY 2 cut(s) 27, 239
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMI GCAATG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 2 cut(s) 145, 158
BseXI GCAGC 2 cut(s) 203, 227
Bsh1285I CGRYCG 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 4 cut(s) 28, 240, 529, 566
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 3 cut(s) 131, 268, 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 441, 450
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 3 cut(s) 222, 293, 304
BspLI GGNNCC 3 cut(s) 138, 437, 438
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 2 cut(s) 27, 239
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 2 cut(s) 27, 239
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 441, 450
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 47, 135, 398
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 2 cut(s) 444, 453
BstMAI GTCTC 3 cut(s) 131, 268, 567
BstMBI GATC 2 cut(s) 441, 450
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 11, 221, 236, 292
BstSCI CCNGG 1 cut(s) 527
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 203, 227
BstV2I GAAGAC 3 cut(s) 30, 386, 546
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 511
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 47, 135, 398
CaiI CAGNNNCTG 1 cut(s) 512
Cfr10I RCCGGY 2 cut(s) 27, 239
Cfr13I GGNCC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 3 cut(s) 119, 144, 393
CviJI RGCY 9 cut(s) 5, 14, 78, 137, 286, 331, 428, 512, 576
CviKI_1 RGCY 9 cut(s) 5, 14, 78, 137, 286, 331, 428, 512, 576
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 470
DpnI GATC 2 cut(s) 443, 452
DpnII GATC 2 cut(s) 441, 450
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 3 cut(s) 122, 147, 396
FaiI YATR 7 cut(s) 8, 110, 120, 145, 187, 189, 394
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 1 cut(s) 449
FatI CATG 3 cut(s) 118, 143, 392
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 192, 216
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 192, 216
FspBI CTAG 1 cut(s) 425
GluI GCNGC 2 cut(s) 192, 216
HapII CCGG 4 cut(s) 28, 240, 529, 566
Hin1II CATG 3 cut(s) 122, 147, 396
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 1 cut(s) 341
HpaII CCGG 4 cut(s) 28, 240, 529, 566
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 2 cut(s) 91, 492
Hpy8I GTNNAC 1 cut(s) 571
HpyAV CCTTC 2 cut(s) 93, 369
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 5 cut(s) 45, 133, 191, 400, 501
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 221, 236, 292
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 3 cut(s) 122, 147, 396
KflI GGGWCCC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 441, 450
LmnI GCTCC 3 cut(s) 106, 142, 531
Lsp1109I GCAGC 2 cut(s) 203, 227
LweI GCATC 2 cut(s) 488, 514
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 465
MalI GATC 2 cut(s) 443, 452
MboI GATC 2 cut(s) 441, 450
MboII GAAGA 7 cut(s) 30, 84, 167, 195, 391, 476, 546
MluCI AATT 2 cut(s) 51, 387
MlyI GAGTC 1 cut(s) 335
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 472
MspI CCGG 4 cut(s) 28, 240, 529, 566
MspR9I CCNGG 1 cut(s) 529
MwoI GCNNNNNNNGC 4 cut(s) 11, 221, 236, 292
NciI CCSGG 1 cut(s) 529
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 441, 450
NlaIII CATG 3 cut(s) 122, 147, 396
NlaIV GGNNCC 3 cut(s) 138, 437, 438
NmuCI GTSAC 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 193, 217
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 436
PshBI ATTAAT 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 138, 437, 438
PspPI GGNCC 1 cut(s) 436
PspPPI RGGWCCY 1 cut(s) 436
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 472
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 192, 216
Sau3AI GATC 2 cut(s) 441, 450
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 529
SetI ASST 5 cut(s) 80, 127, 476, 514, 563
SfaNI GCATC 2 cut(s) 488, 514
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 472
Sse9I AATT 2 cut(s) 51, 387
SsiI CCGC 3 cut(s) 222, 293, 304
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 563
TaqI TCGA 3 cut(s) 32, 281, 360
TasI AATT 2 cut(s) 51, 387
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 2 cut(s) 191, 215
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 3 cut(s) 125, 399, 476
TspGWI ACGGA 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.