FvH4_2g38210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015424
Physical Location & Seq
Reverse (-)
27670665 .. 27672164
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38210.t1

Sequence Viewer

Length: 729 bp
ATGGCTATGGAGGCTGTTGCTTTAAACAGGTCGATGTCTTCTTCCTGCAAACAAATTAGAATGATGGGAAGAAGAGGCTTCCCTACTTCTTCTGAAAATGTTGCTCCAATCATGAACATCCATGGAGGTCTCTTGCAGGCTCCTCATCCTCACCCTCCTCATCCATTTTCCTCCTTTAACCCCTCCCTCTTCAATCATTATATGCAGCAACAGCTTCTTCATCATCAGTCACAGCAGCAGCAGCCACCACTGCTTCCTCTGCCGGTTTCGAAGCCACTGCACCAGTCTCTCCCCTCTCTCCCATCTCGTACGCGAAGCCTCTCGCGCCCTCCCACCGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTCACTCCGAAGAAGCCAAAGTCGAAGCAATCCAAGAAGGAAGACATTAATACCATGCCAACAGACTGCTTCGTGATGGCTGCTTCCACCACCCGTTTGGGACCCGATCCAAAAGATCTTCCTAAAGATGTGACTAAGATGTTGTCATCTTCATCAGGTGAGACTTCTTTTATTGGTAGTGTTGGAGTTGGAAAAAACATGGACAATTTTTCAGGTTCCATTTTCACTCTGGCACCACCTCCGAGTAGCTTGCCCCTTCCGAGGTTTTCTCTGAAACCGGCGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCGGAGCAACGGACAATCTCTGCCGTCTTCTACGTCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

10.56

Isoelectric Point (pI)

72.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AccII CGCG 2 cut(s) 313, 325
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 470
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 630
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 3 cut(s) 214, 618, 671
AluI AGCT 3 cut(s) 214, 618, 671
Alw26I GTCTC 4 cut(s) 134, 291, 524, 725
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 671
ApeKI GCWGC 5 cut(s) 205, 235, 238, 241, 449
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 143, 539
AsuII TTCGAA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 601
BbsI GAAGAC 3 cut(s) 30, 417, 704
BbvI GCAGC 5 cut(s) 217, 247, 250, 253, 436
BccI CCATC 3 cut(s) 58, 310, 439
BceAI ACGGC 1 cut(s) 693
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 601, 635
BcoDI GTCTC 4 cut(s) 134, 291, 524, 725
BglII AGATCT 1 cut(s) 484
BisI GCNGC 5 cut(s) 206, 236, 239, 242, 450
BlsI GCNGC 5 cut(s) 207, 237, 240, 243, 451
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 5 cut(s) 141, 471, 472, 586, 603
BmsI GCATC 2 cut(s) 647, 673
BpiI GAAGAC 3 cut(s) 30, 417, 704
BplI GAGNNNNNCTC 2 cut(s) 622, 654
Bpu14I TTCGAA 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 121, 629
BsaWI WCCGGW 1 cut(s) 723
Bsc4I CCNNNNNNNGG 1 cut(s) 630
Bse118I RCCGGY 2 cut(s) 262, 646
Bse1I ACTGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 121, 629
BseGI GGATG 3 cut(s) 117, 145, 160
BseLI CCNNNNNNNGG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 132, 147
BseXI GCAGC 5 cut(s) 217, 247, 250, 253, 436
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 2 cut(s) 313, 325
BshNI GGYRCC 1 cut(s) 601
BsiSI CCGG 4 cut(s) 263, 647, 687, 724
BsiWI CGTACG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 630
BsmAI GTCTC 4 cut(s) 134, 291, 524, 725
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 269
Bsp143I GATC 2 cut(s) 475, 484
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 1 cut(s) 336
BspFNI CGCG 2 cut(s) 313, 325
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 5 cut(s) 141, 471, 472, 586, 603
BspPI GGATC 1 cut(s) 470
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 2 cut(s) 262, 646
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 2 cut(s) 262, 646
BssECI CCNNGG 2 cut(s) 121, 629
BssMI GATC 2 cut(s) 475, 484
BssT1I CCWWGG 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 67, 194
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 138, 620
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 117, 145, 160
BstFNI CGCG 2 cut(s) 313, 325
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 478, 487
BstMAI GTCTC 4 cut(s) 134, 291, 524, 725
BstMBI GATC 2 cut(s) 475, 484
BstMWI GCNNNNNNNGC 6 cut(s) 11, 211, 241, 250, 259, 324
BstUI CGCG 2 cut(s) 313, 325
BstV1I GCAGC 5 cut(s) 217, 247, 250, 253, 436
BstV2I GAAGAC 3 cut(s) 30, 417, 704
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 484
BtgI CCRYGG 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 670
BtsCI GGATG 3 cut(s) 117, 145, 160
BtsI GCAGTG 2 cut(s) 248, 275
BtsIMutI CAGTG 2 cut(s) 248, 275
Cac8I GCNNGC 2 cut(s) 138, 620
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 2 cut(s) 262, 646
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 112, 122, 424, 568
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 477, 486
DpnII GATC 2 cut(s) 475, 484
DraI TTTAAA 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 67, 194
EarI CTCTTC 2 cut(s) 67, 194
Eco130I CCWWGG 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 4 cut(s) 115, 125, 427, 571
FaiI YATR 7 cut(s) 8, 113, 123, 201, 203, 425, 569
FaqI GGGAC 1 cut(s) 483
FatI CATG 4 cut(s) 111, 121, 423, 567
Fnu4HI GCNGC 5 cut(s) 206, 236, 239, 242, 450
FokI GGATG 3 cut(s) 104, 132, 147
Fsp4HI GCNGC 5 cut(s) 206, 236, 239, 242, 450
GlaI GCGC 1 cut(s) 326
GluI GCNGC 5 cut(s) 206, 236, 239, 242, 450
HapII CCGG 4 cut(s) 263, 647, 687, 724
HhaI GCGC 1 cut(s) 327
Hin1II CATG 4 cut(s) 115, 125, 427, 571
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HpaII CCGG 4 cut(s) 263, 647, 687, 724
HphI GGTGA 2 cut(s) 143, 539
Hpy188I TCNGA 5 cut(s) 94, 378, 612, 630, 642
Hpy188III TCNNGA 2 cut(s) 112, 442
HpyAV CCTTC 2 cut(s) 400, 635
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 5 cut(s) 48, 136, 205, 280, 660
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 211, 241, 250, 259, 324
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 4 cut(s) 115, 125, 427, 571
HspAI GCGC 1 cut(s) 325
KflI GGGWCCC 1 cut(s) 470
Kzo9I GATC 2 cut(s) 475, 484
LmnI GCTCC 3 cut(s) 109, 145, 689
Lsp1109I GCAGC 5 cut(s) 217, 247, 250, 253, 436
LweI GCATC 2 cut(s) 647, 673
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 2 cut(s) 228, 499
MalI GATC 2 cut(s) 477, 486
MboI GATC 2 cut(s) 475, 484
MflI RGATCY 1 cut(s) 484
MluCI AATT 2 cut(s) 54, 574
MmeI TCCRAC 2 cut(s) 532, 538
MseI TTAA 3 cut(s) 23, 177, 417
MspI CCGG 4 cut(s) 263, 647, 687, 724
MvnI CGCG 2 cut(s) 313, 325
MwoI GCNNNNNNNGC 6 cut(s) 11, 211, 241, 250, 259, 324
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 475, 484
NlaIII CATG 4 cut(s) 115, 125, 427, 571
NlaIV GGNNCC 5 cut(s) 141, 471, 472, 586, 603
NmuCI GTSAC 2 cut(s) 228, 499
NspV TTCGAA 1 cut(s) 269
PagI TCATGA 1 cut(s) 111
Pfl23II CGTACG 1 cut(s) 308
PkrI GCNGC 5 cut(s) 207, 237, 240, 243, 451
PpuMI RGGWCCY 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 470
PspLI CGTACG 1 cut(s) 308
PspN4I GGNNCC 5 cut(s) 141, 471, 472, 586, 603
PspPI GGNCC 1 cut(s) 470
PspPPI RGGWCCY 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 3 cut(s) 23, 177, 417
SatI GCNGC 5 cut(s) 206, 236, 239, 242, 450
Sau3AI GATC 2 cut(s) 475, 484
Sau96I GGNCC 1 cut(s) 470
SfaNI GCATC 2 cut(s) 647, 673
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 1 cut(s) 470
Sse9I AATT 2 cut(s) 54, 574
SsiI CCGC 1 cut(s) 336
StyI CCWWGG 1 cut(s) 121
TaiI ACGT 1 cut(s) 721
TaqI TCGA 3 cut(s) 32, 269, 392
TasI AATT 2 cut(s) 54, 574
Tru1I TTAA 3 cut(s) 23, 177, 417
Tru9I TTAA 3 cut(s) 23, 177, 417
TscAI CASTG 2 cut(s) 255, 282
TseFI GTSAC 2 cut(s) 228, 499
TseI GCWGC 5 cut(s) 205, 235, 238, 241, 449
Tsp45I GTSAC 2 cut(s) 228, 499
TspDTI ATGAA 3 cut(s) 128, 209, 510
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 2 cut(s) 255, 282
VpaK11BI GGWCC 1 cut(s) 470
VspI ATTAAT 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 2 cut(s) 463, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.