Prupe.1G363100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015424
Physical Location & Seq
Reverse (-)
33389780 .. 33391371
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G363100.1

Sequence Viewer

Length: 756 bp
ATGGAGGCTGTTGTTGTAGACCAGTCAATCTCTGCCTGCAAGCAGATTAAAATGATCAGAACAACCCCAAGATCCTCTGAAAATCTTGCTCCCATAAATTACAACATCCATGGGGGTCTCTTGCAGGCTCCTTCACCTTCTCTCTCATTTTCATATAACCCTCCAGCTTCTCTCTACAATCAATATCGGTACCAGCAACTTCAACACGTACAGAGGCAGCAGCAACAACACCCACCTCTCCTTCCTCTGCCGGTTCCAAACAGACCTCCTCATCATCACCAGTCTCTGCCATCTCTCCCATCTCGTACCCGAGGCCTCTCTCGCCCTCCCACCACCAGAAAGGCCAACAACGCCAGAAGCCAATCTCTCACACCCAAGAAACCAAAATCAAAGCCCTCTAAGAAAGAAGAAGCTAAGCAAATATCTGACTGCTTGATCATTGCTTCCACCAACCGTTTGGGACCCGACCCGAATGATCTTCCCAAAGATGTCACTAAGGTTTTGATGACATCATCATCATCATCATCATCTTCCTCTTCATCATCAATTGGTAATATGAGTGATCTTAGTGGTGGTGGTGTTGGTGTGGGAGATATGGATAAGTTTTCAGGTTCCATTTTCACTCTCTCGCCACCTCCGAGTAGTTTGCCTCTCCCAAGGTTTTCTCTGCAGCGAAGGCTCAGTCGCAACGCTGAAGCTGCAGGGATCGACGCAGGAGCAACGGACAATCTCCGCCGTCTGTTACGTCTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

252

Amino Acids

27.31

Weight (kDa)

10.48

Isoelectric Point (pI)

75.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20070
fragaria_vesca FvH4_2g38210
prunus_persica Prupe.1G363100_v2.0.a1
pyrus_communis pycom08g00900 pycom15g00890
rosa_chinensis RchiOBHm_Chr6g0303181
rosa_laevigata RLG00000011099
rosa_multiflora Rmu_co8490779.1_g000001 Rmu_sc0007936.1_g000001
rosa_roxburghii Rroxscaffold_7G00164950
rosa_rugosa Rorug06G0319700
rosa_samantha Rh6AG433600 Rh6BG469100 Rh6CG446100 Rh6DG432800
rosa_wichuraiana Rw6G037600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 18
AciI CCGC 2 cut(s) 733, 751
AclWI GGATC 2 cut(s) 66, 713
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 3 cut(s) 191, 210, 307
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 3 cut(s) 167, 413, 698
AluI AGCT 3 cut(s) 167, 413, 698
Alw26I GTCTC 3 cut(s) 122, 288, 752
AlwI GGATC 2 cut(s) 66, 713
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 313, 342
ApeKI GCWGC 4 cut(s) 217, 220, 670, 698
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
Asp718I GGTACC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 126, 269
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 229, 232, 682, 685
BccI CCATC 2 cut(s) 298, 307
BceAI ACGGC 1 cut(s) 720
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BclI TGATCA 2 cut(s) 54, 435
BcoDI GTCTC 3 cut(s) 122, 288, 752
BfmI CTRYAG 2 cut(s) 668, 699
BisI GCNGC 4 cut(s) 218, 221, 671, 699
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 4 cut(s) 219, 222, 672, 700
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 6 cut(s) 129, 191, 255, 462, 463, 613
BpmI CTGGAG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 109, 310, 656
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 22, 280
Bse3DI GCAATG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 109, 310, 656
BseGI GGATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 694
BseNI ACTGG 2 cut(s) 22, 280
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 229, 232, 682, 685
BshFI GGCC 2 cut(s) 315, 344
BshNI GGYRCC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 474
BsmAI GTCTC 3 cut(s) 122, 288, 752
BsmBI CGTCTC 1 cut(s) 752
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 2 cut(s) 315, 344
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 309
Bsp143I GATC 6 cut(s) 54, 71, 435, 475, 562, 705
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 733, 751
BspANI GGCC 2 cut(s) 315, 344
BspCNI CTCAG 1 cut(s) 693
BspLI GGNNCC 6 cut(s) 129, 191, 255, 462, 463, 613
BspMAI CTGCAG 2 cut(s) 672, 703
BspPI GGATC 2 cut(s) 66, 713
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 22, 280
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 109, 310, 656
BssMI GATC 6 cut(s) 54, 71, 435, 475, 562, 705
BssT1I CCWWGG 2 cut(s) 109, 656
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 37, 41, 126
BstDEI CTNAG 5 cut(s) 399, 414, 495, 566, 680
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 6 cut(s) 57, 74, 438, 478, 565, 708
BstMAI GTCTC 3 cut(s) 122, 288, 752
BstMBI GATC 6 cut(s) 54, 71, 435, 475, 562, 705
BstMWI GCNNNNNNNGC 4 cut(s) 321, 350, 676, 698
BstSFI CTRYAG 2 cut(s) 668, 699
BstV1I GCAGC 4 cut(s) 229, 232, 682, 685
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 2 cut(s) 315, 344
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 37, 41, 126
CaiI CAGNNNCTG 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 461
CseI GACGC 1 cut(s) 719
Csp6I GTAC 3 cut(s) 190, 209, 306
CviAII CATG 1 cut(s) 110
CviQI GTAC 3 cut(s) 190, 209, 306
DdeI CTNAG 5 cut(s) 399, 414, 495, 566, 680
DpnI GATC 6 cut(s) 56, 73, 437, 477, 564, 707
DpnII GATC 6 cut(s) 54, 71, 435, 475, 562, 705
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 109, 656
Eco147I AGGCCT 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 461
EcoT14I CCWWGG 2 cut(s) 109, 656
ErhI CCWWGG 2 cut(s) 109, 656
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 1 cut(s) 113
FaiI YATR 6 cut(s) 95, 111, 154, 156, 557, 596
FaqI GGGAC 1 cut(s) 474
FatI CATG 1 cut(s) 109
FbaI TGATCA 2 cut(s) 54, 435
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 218, 221, 671, 699
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 218, 221, 671, 699
GluI GCNGC 4 cut(s) 218, 221, 671, 699
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 315, 344
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 719
Hin1II CATG 1 cut(s) 113
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 126, 269
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 4 cut(s) 59, 79, 427, 639
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 4 cut(s) 141, 147, 251, 669
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 207, 745
HpyCH4V TGCA 4 cut(s) 39, 124, 670, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 350, 676, 698
HpyF3I CTNAG 5 cut(s) 399, 414, 495, 566, 680
HpySE526I ACGT 2 cut(s) 207, 745
Hsp92II CATG 1 cut(s) 113
KflI GGGWCCC 1 cut(s) 461
KpnI GGTACC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 54, 435
Kzo9I GATC 6 cut(s) 54, 71, 435, 475, 562, 705
LmnI GCTCC 3 cut(s) 94, 133, 716
Lsp1109I GCAGC 4 cut(s) 229, 232, 682, 685
MaeII ACGT 2 cut(s) 207, 745
MaeIII GTNAC 2 cut(s) 490, 741
MalI GATC 6 cut(s) 56, 73, 437, 477, 564, 707
MboI GATC 6 cut(s) 54, 71, 435, 475, 562, 705
MboII GAAGA 4 cut(s) 419, 470, 522, 528
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 71
MluCI AATT 2 cut(s) 97, 546
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 753
MspI CCGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 321, 350, 676, 698
NcoI CCATGG 1 cut(s) 109
NdeII GATC 6 cut(s) 54, 71, 435, 475, 562, 705
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 6 cut(s) 129, 191, 255, 462, 463, 613
NmuCI GTSAC 1 cut(s) 490
PceI AGGCCT 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 635
PkrI GCNGC 4 cut(s) 219, 222, 672, 700
Ppu21I YACGTR 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 461
PspN4I GGNNCC 6 cut(s) 129, 191, 255, 462, 463, 613
PspPI GGNCC 1 cut(s) 461
PspPPI RGGWCCY 1 cut(s) 461
PstI CTGCAG 2 cut(s) 672, 703
PstNI CAGNNNCTG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 3 cut(s) 191, 210, 307
RsaNI GTAC 3 cut(s) 190, 209, 306
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 218, 221, 671, 699
Sau3AI GATC 6 cut(s) 54, 71, 435, 475, 562, 705
Sau96I GGNCC 1 cut(s) 461
SfcI CTRYAG 2 cut(s) 668, 699
SinI GGWCC 1 cut(s) 461
Sse9I AATT 2 cut(s) 97, 546
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 733, 751
StuI AGGCCT 1 cut(s) 315
StyI CCWWGG 2 cut(s) 109, 656
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 2 cut(s) 210, 748
TaqI TCGA 1 cut(s) 708
TasI AATT 2 cut(s) 97, 546
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 4 cut(s) 217, 220, 670, 698
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 141, 528
TspGWI ACGGA 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.