AT1G20330
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7038527 .. 7040231
1705 bp
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UTR
Exon/CDS
Intron
AT1G20330.1

Sequence Viewer

Length: 1086 bp
ATGGACTCTTTAACACTCTTCTTCACCGGTGCACTCGTCGCCGTCGGTATCTACTGGTTCCTCTGCGTTCTCGGTCCAGCAGAGCGTAAAGGCAAACGAGCCGTAGATCTCTCTGGTGGCTCAATCTCCGCCGAGAAAGTCCAAGACAACTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAAAGAAATCGAAACCGCCGAGAAAGTTCCAGACTTCGTCGACACATTCTACAATCTCGTCACCGACATATACGAGTGGGGATGGGGACAATCCTTCCACTTCTCACCATCAATCCCCGGAAAATCTCACAAAGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTGATCCAAGTCAAACCTGGTCAAAAGATCCTAGACGTCGGATGCGGTGTCGGCGGTCCGATGCGAGCGATTGCATCTCACTCGCGAGCTAACGTAGTCGGGATTACAATAAACGAGTATCAGGTGAACAGAGCTCGTCTCCACAATAAGAAAGCTGGTCTCGACGCGCTTTGCGAGGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGACAACAGTTTCGACGGTGCTTATTCCATCGAAGCCACGTGTCACGCGCCGAAGCTGGAAGAAGTGTACGCAGAGATCTACAGGGTGTTGAAACCCGGATCTATGTATGTGTCGTACGAGTGGGTTACGACGGAGAAATTTAAGGCGGAGGATGACGAACACGTGGAGGTAATCCAAGGGATTGAGAGAGGCGATGCGTTACCAGGGCTTAGGGCTTACGTGGATATAGCTGAGACGGCTAAAAAGGTTGGGTTTGAGATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTGAGCCGTGGTGGACTAGGCTTAAGATGGGTAGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATTTTGTCAGCGGTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATTCTCTGCAGAAAACCGGAGTCACCGGAGGAGAGTTCTTGA

Protein Analysis

361

Amino Acids

40.45

Weight (kDa)

5.75

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 75 - 281 1.5e-15 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 110 - 230 3.9e-11 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 122 - 236 4.1e-17 Methyltransferase domain
Methyltransf_23 PF13489 122 - 223 1.5e-06 Methyltransferase domain
Methyltransf_25 PF13649 127 - 221 5.9e-20 Methyltransferase domain
Methyltransf_11 PF08241 128 - 224 2.2e-23 Methyltransferase domain
Methyltransf_12 PF08242 128 - 223 4.2e-11 Methyltransferase domain
Sterol_MT_C PF08498 291 - 355 2.7e-23 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 222
AccII CGCG 4 cut(s) 325, 436, 518, 611
AciI CCGC 7 cut(s) 129, 175, 198, 396, 405, 710, 935
AclWI GGATC 4 cut(s) 349, 373, 670, 846
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 701
AcvI CACGTG 2 cut(s) 603, 727
AcyI GRCGYC 2 cut(s) 318, 387
AdeI CACNNNGTG 1 cut(s) 916
AfaI GTAC 3 cut(s) 161, 632, 680
AflII CTTAAG 1 cut(s) 878
AflIII ACRYGT 2 cut(s) 602, 724
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 655
AjnI CCWGG 2 cut(s) 367, 766
AluBI AGCT 5 cut(s) 440, 485, 506, 619, 794
AluI AGCT 5 cut(s) 440, 485, 506, 619, 794
Alw21I GWGCWC 2 cut(s) 34, 487
Alw26I GTCTC 3 cut(s) 494, 515, 791
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 4 cut(s) 349, 373, 670, 846
AoxI GGCC 1 cut(s) 342
ApaLI GTGCAC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 701
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AsiGI ACCGGT 1 cut(s) 26
AspLEI GCGC 3 cut(s) 327, 520, 613
AspS9I GGNCC 2 cut(s) 74, 407
AsuC2I CCSGG 2 cut(s) 300, 660
AsuHPI GGTGA 6 cut(s) 16, 235, 279, 487, 1025, 1059
AvaII GGWCC 2 cut(s) 74, 407
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 487
BbrPI CACGTG 2 cut(s) 603, 727
Bbv12I GWGCWC 2 cut(s) 34, 487
BccI CCATC 5 cut(s) 258, 298, 334, 599, 877
BceAI ACGGC 7 cut(s) 26, 86, 162, 329, 541, 816, 847
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 2 cut(s) 369, 768
BcnI CCSGG 2 cut(s) 300, 660
BcoDI GTCTC 3 cut(s) 494, 515, 791
BfaI CTAG 2 cut(s) 383, 873
BfmI CTRYAG 2 cut(s) 643, 1051
BfrI CTTAAG 1 cut(s) 878
BglII AGATCT 3 cut(s) 106, 349, 639
BlpI GCTNAGC 1 cut(s) 858
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 300, 369, 660, 768
Bme18I GGWCC 2 cut(s) 74, 407
BmgT120I GGNCC 2 cut(s) 74, 407
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 4 cut(s) 300, 369, 660, 768
BmsI GCATC 6 cut(s) 383, 402, 434, 543, 748, 1026
BplI GAGNNNNNCTC 2 cut(s) 474, 506
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 773
Bpu1102I GCTNAGC 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 300, 660
BsaAI YACGTR 3 cut(s) 603, 727, 784
BsaHI GRCGYC 2 cut(s) 318, 387
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 298, 739, 767, 863
BsaWI WCCGGW 4 cut(s) 26, 1019, 1060, 1069
Bse118I RCCGGY 2 cut(s) 26, 853
Bse1I ACTGG 2 cut(s) 59, 167
BseBI CCWGG 2 cut(s) 369, 768
BseDI CCNNGG 4 cut(s) 298, 739, 767, 863
BseGI GGATG 3 cut(s) 269, 398, 721
BseMII CTCAG 2 cut(s) 786, 849
BseNI ACTGG 2 cut(s) 59, 167
BseRI GAGGAG 1 cut(s) 1023
BseSI GKGCMC 1 cut(s) 34
Bsh1236I CGCG 4 cut(s) 325, 436, 518, 611
BshFI GGCC 1 cut(s) 344
BshTI ACCGGT 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 34, 487
BsiSI CCGG 7 cut(s) 27, 300, 660, 854, 1020, 1061, 1070
BsiWI CGTACG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 282
BsmAI GTCTC 3 cut(s) 494, 515, 791
BsmBI CGTCTC 2 cut(s) 494, 791
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 344
Bso31I GGTCTC 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 34, 487
Bsp143I GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
Bsp1720I GCTNAGC 1 cut(s) 858
Bsp68I TCGCGA 1 cut(s) 436
BspACI CCGC 7 cut(s) 129, 175, 198, 396, 405, 710, 935
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 787, 850
BspFNI CGCG 4 cut(s) 325, 436, 518, 611
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 1055
BspPI GGATC 4 cut(s) 349, 373, 670, 846
BspTI CTTAAG 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 515
BsrFI RCCGGY 2 cut(s) 26, 853
BsrI ACTGG 2 cut(s) 59, 167
BssAI RCCGGY 2 cut(s) 26, 853
BssECI CCNNGG 4 cut(s) 298, 739, 767, 863
BssMI GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
BssNI GRCGYC 2 cut(s) 318, 387
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 2 cut(s) 369, 768
Bst4CI ACNGT 4 cut(s) 159, 572, 581, 961
Bst6I CTCTTC 2 cut(s) 23, 330
BstACI GRCGYC 2 cut(s) 318, 387
BstAFI CTTAAG 1 cut(s) 878
BstBAI YACGTR 3 cut(s) 603, 727, 784
BstC8I GCNNGC 3 cut(s) 417, 438, 894
BstDEI CTNAG 3 cut(s) 773, 795, 858
BstDSI CCRYGG 1 cut(s) 863
BstF5I GGATG 3 cut(s) 269, 398, 721
BstFNI CGCG 4 cut(s) 325, 436, 518, 611
BstHHI GCGC 3 cut(s) 327, 520, 613
BstKTI GATC 7 cut(s) 109, 352, 357, 381, 642, 665, 841
BstMAI GTCTC 3 cut(s) 494, 515, 791
BstMBI GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
BstMWI GCNNNNNNNGC 3 cut(s) 38, 402, 800
BstNI CCWGG 2 cut(s) 369, 768
BstSCI CCNGG 4 cut(s) 298, 367, 658, 766
BstSFI CTRYAG 2 cut(s) 643, 1051
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 4 cut(s) 325, 436, 518, 611
BstX2I RGATCY 6 cut(s) 106, 349, 378, 639, 662, 838
BstYI RGATCY 6 cut(s) 106, 349, 378, 639, 662, 838
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 863
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 269, 398, 721
BtuMI TCGCGA 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 417, 438, 894
CciI TCATGA 1 cut(s) 970
CfoI GCGC 3 cut(s) 327, 520, 613
Cfr10I RCCGGY 2 cut(s) 26, 853
Cfr13I GGNCC 2 cut(s) 74, 407
CpoI CGGWCCG 1 cut(s) 407
CseI GACGC 2 cut(s) 326, 524
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 3 cut(s) 160, 631, 679
CspAI ACCGGT 1 cut(s) 26
CspI CGGWCCG 1 cut(s) 407
CviAII CATG 1 cut(s) 971
CviQI GTAC 3 cut(s) 160, 631, 679
DdeI CTNAG 3 cut(s) 773, 795, 858
DpnI GATC 7 cut(s) 108, 351, 356, 380, 641, 664, 840
DpnII GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
DraIII CACNNNGTG 1 cut(s) 916
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 23, 330
EarI CTCTTC 2 cut(s) 23, 330
EciI GGCGGA 3 cut(s) 118, 164, 725
Ecl136II GAGCTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 74, 407
Eco53kI GAGCTC 1 cut(s) 485
Eco72I CACGTG 2 cut(s) 603, 727
EcoICRI GAGCTC 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 367, 766
EcoT14I CCWWGG 1 cut(s) 739
EcoT22I ATGCAT 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 739
Esp3I CGTCTC 2 cut(s) 494, 791
FaeI CATG 1 cut(s) 974
FaiI YATR 8 cut(s) 251, 253, 668, 672, 791, 972, 1041, 1043
FaqI GGGAC 1 cut(s) 282
FatI CATG 1 cut(s) 970
FauNDI CATATG 1 cut(s) 1041
FblI GTMKAC 1 cut(s) 222
FokI GGATG 3 cut(s) 276, 405, 728
FriOI GRGCYC 1 cut(s) 487
FspBI CTAG 2 cut(s) 383, 873
GlaI GCGC 3 cut(s) 326, 519, 612
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 1 cut(s) 344
HapII CCGG 7 cut(s) 27, 300, 660, 854, 1020, 1061, 1070
HgaI GACGC 2 cut(s) 326, 524
HhaI GCGC 3 cut(s) 327, 520, 613
Hin1I GRCGYC 2 cut(s) 318, 387
Hin1II CATG 1 cut(s) 974
Hin6I GCGC 3 cut(s) 325, 518, 611
HinP1I GCGC 3 cut(s) 325, 518, 611
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 5 cut(s) 5, 847, 907, 1045, 1064
HpaII CCGG 7 cut(s) 27, 300, 660, 854, 1020, 1061, 1070
HphI GGTGA 6 cut(s) 16, 235, 279, 487, 1025, 1059
Hpy166II GTNNAC 6 cut(s) 32, 223, 478, 631, 851, 870
Hpy188I TCNGA 5 cut(s) 354, 392, 411, 924, 1035
Hpy188III TCNNGA 7 cut(s) 212, 435, 451, 512, 550, 971, 1083
Hpy8I GTNNAC 6 cut(s) 32, 223, 478, 631, 851, 870
Hpy99I CGWCG 7 cut(s) 41, 47, 224, 392, 518, 581, 697
HpyAV CCTTC 3 cut(s) 286, 823, 829
HpyCH4III ACNGT 4 cut(s) 159, 572, 581, 961
HpyCH4IV ACGT 5 cut(s) 387, 444, 602, 726, 783
HpyCH4V TGCA 4 cut(s) 32, 425, 1039, 1053
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 402, 800
HpyF3I CTNAG 3 cut(s) 773, 795, 858
HpySE526I ACGT 5 cut(s) 387, 444, 602, 726, 783
Hsp92I GRCGYC 2 cut(s) 318, 387
Hsp92II CATG 1 cut(s) 974
HspAI GCGC 3 cut(s) 325, 518, 611
Kzo9I GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
LmnI GCTCC 1 cut(s) 952
LweI GCATC 6 cut(s) 383, 402, 434, 543, 748, 1026
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 2 cut(s) 383, 873
MaeII ACGT 5 cut(s) 387, 444, 602, 726, 783
MaeIII GTNAC 6 cut(s) 241, 539, 605, 688, 762, 1065
MalI GATC 7 cut(s) 108, 351, 356, 380, 641, 664, 840
MboI GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
MboII GAAGA 5 cut(s) 10, 13, 163, 347, 635
MflI RGATCY 6 cut(s) 106, 349, 378, 639, 662, 838
MhlI GDGCHC 2 cut(s) 34, 487
MluCI AATT 1 cut(s) 701
MlyI GAGTC 2 cut(s) 856, 1073
MmeI TCCRAC 2 cut(s) 370, 919
Mph1103I ATGCAT 1 cut(s) 1041
MseI TTAA 4 cut(s) 11, 705, 879, 984
MspA1I CMGCKG 1 cut(s) 935
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 7 cut(s) 27, 300, 660, 854, 1020, 1061, 1070
MspR9I CCNGG 4 cut(s) 300, 369, 660, 768
MvaI CCWGG 2 cut(s) 369, 768
MvnI CGCG 4 cut(s) 325, 436, 518, 611
MwoI GCNNNNNNNGC 3 cut(s) 38, 402, 800
NciI CCSGG 2 cut(s) 300, 660
NdeI CATATG 1 cut(s) 1041
NdeII GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
NlaIII CATG 1 cut(s) 974
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 2 cut(s) 157, 226
NmuCI GTSAC 3 cut(s) 241, 605, 1065
NruI TCGCGA 1 cut(s) 436
NsiI ATGCAT 1 cut(s) 1041
PagI TCATGA 1 cut(s) 970
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 522
PfeI GAWTC 2 cut(s) 907, 1045
Pfl23II CGTACG 1 cut(s) 678
PflFI GACNNNGTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 2 cut(s) 855, 1072
PmaCI CACGTG 2 cut(s) 603, 727
PmlI CACGTG 2 cut(s) 603, 727
PpsI GAGTC 2 cut(s) 855, 1072
Ppu21I YACGTR 3 cut(s) 603, 727, 784
Psp124BI GAGCTC 1 cut(s) 487
Psp6I CCWGG 2 cut(s) 367, 766
PspCI CACGTG 2 cut(s) 603, 727
PspGI CCWGG 2 cut(s) 367, 766
PspLI CGTACG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 74, 407
PstI CTGCAG 1 cut(s) 1055
PsuI RGATCY 6 cut(s) 106, 349, 378, 639, 662, 838
PsyI GACNNNGTC 1 cut(s) 218
RruI TCGCGA 1 cut(s) 436
RsaI GTAC 3 cut(s) 161, 632, 680
RsaNI GTAC 3 cut(s) 160, 631, 679
Rsr2I CGGWCCG 1 cut(s) 407
RsrII CGGWCCG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 487
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 4 cut(s) 11, 705, 879, 984
Sau3AI GATC 7 cut(s) 106, 349, 354, 378, 639, 662, 838
Sau96I GGNCC 2 cut(s) 74, 407
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 2 cut(s) 856, 1073
ScrFI CCNGG 4 cut(s) 300, 369, 660, 768
SduI GDGCHC 2 cut(s) 34, 487
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 6 cut(s) 383, 402, 434, 543, 748, 1026
SfcI CTRYAG 2 cut(s) 643, 1051
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 2 cut(s) 74, 407
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 1 cut(s) 701
SsiI CCGC 7 cut(s) 129, 175, 198, 396, 405, 710, 935
SspI AATATT 1 cut(s) 1026
SspMI CTAG 2 cut(s) 383, 873
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 4 cut(s) 298, 367, 658, 766
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 4 cut(s) 159, 572, 581, 961
TaiI ACGT 5 cut(s) 390, 447, 605, 729, 786
TaqI TCGA 6 cut(s) 192, 222, 513, 561, 576, 594
TaqII GACCGA 1 cut(s) 62
TasI AATT 1 cut(s) 701
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 907, 1045
Tru1I TTAA 4 cut(s) 11, 705, 879, 984
Tru9I TTAA 4 cut(s) 11, 705, 879, 984
TseFI GTSAC 3 cut(s) 241, 605, 1065
Tsp45I GTSAC 3 cut(s) 241, 605, 1065
TspDTI ATGAA 1 cut(s) 959
TspGWI ACGGA 1 cut(s) 710
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 878
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 74, 407
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 383, 873
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.