AT1G76090
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
28550202 .. 28551836
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76090.1

Sequence Viewer

Length: 1080 bp
ATGGACTCGGTGGCTCTCTACTGCACCGCTGGTCTCATTGCCGGCGCCGTCTACTGGTTCATATGCGTCCTAGGTCCAGCAGAACGAAAAGGCAAACGAGCCTCTGATCTCTCCGGCGGCTCAATCTCCGCAGAAAAAGTCAAAGACAACTATAACCAATACTGGTCTTTCTTCCGCAAACCAAAAGAGATCGAATCAGCCGAGAAAGTACCTGACTTCGTCGACACGTTCTACAATCTTGTCACTGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCCTCATGTCCCTGGAAAATCCGACAAAGACGCCACAAGAATCCACGAAGAAATGGCCGTCGATCTCATCAAAGTGAAACCGGGACAAAAGATTCTTGACGCTGGTTGCGGCGTGGGTGGGCCGATGAGAGCCATCGCGGCCCATTCCAAGGCCCAAGTCACTGGAATCACTATCAACGAGTACCAAGTGCAACGAGCCAAGCTTCACAACAAGAAAGCTGGACTTGATTCTCTCTGCAACGTCGTTTGTGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTTGACGGAGCTTACTCGATCGAAGCTACGTGTCACGCTCCTAAGCTCGAAGAAGTATACTCGGAGATCTTCAGAGTGATGAAACCAGGATCTTTGTTCGTGTCCTACGAATGGGTCACCACTGAAAAATACAGAGACGATGACGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTTCCTGGACTAAGAAGCTACGCTGATATAGCCGTGACGGCGAAGAAAGTTGGGTTTGAGGTAGTGAAGGAGAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAACCGGTTAAAGATGGGAAGGATTGCTTATTGGAGAAACCATGTTGTGGTTGTGATTCTTTCTGCTATTGGGGTTGCTCCTAAAGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGTGGTGAGACTGGAATCTTCTCTCCGATGCATATGATTCTCTGTAGAAAACCAGAGAAAGCTTCTGAATGA

Protein Analysis

359

Amino Acids

40.12

Weight (kDa)

8.03

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 75 - 281 1.3e-13 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 110 - 229 2e-09 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 122 - 248 8.3e-17 Methyltransferase domain
Methyltransf_23 PF13489 122 - 276 1.4e-07 Methyltransferase domain
Methyltransf_25 PF13649 127 - 221 5.2e-18 Methyltransferase domain
Methyltransf_11 PF08241 128 - 225 3.6e-21 Methyltransferase domain
Methyltransf_12 PF08242 128 - 223 2.6e-09 Methyltransferase domain
Sterol_MT_C PF08498 292 - 355 2.9e-22 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 916
AccI GTMKAC 3 cut(s) 51, 222, 630
AccII CGCG 1 cut(s) 425
AciI CCGC 6 cut(s) 27, 117, 129, 175, 396, 425
AclWI GGATC 2 cut(s) 670, 752
AcoI YGGCCR 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 628
AcyI GRCGYC 2 cut(s) 45, 318
AfaI GTAC 2 cut(s) 210, 470
AfiI CCNNNNNNNGG 4 cut(s) 54, 436, 684, 916
AflIII ACRYGT 3 cut(s) 225, 570, 602
AgeI ACCGGT 1 cut(s) 873
AgsI TTSAA 1 cut(s) 740
AjiI CACGTC 1 cut(s) 733
AjnI CCWGG 3 cut(s) 298, 658, 766
AluBI AGCT 7 cut(s) 490, 506, 584, 599, 619, 780, 1070
AluI AGCT 7 cut(s) 490, 506, 584, 599, 619, 780, 1070
Alw26I GTCTC 4 cut(s) 38, 702, 750, 1010
AlwI GGATC 2 cut(s) 670, 752
AoxI GGCC 4 cut(s) 342, 407, 426, 438
AsiGI ACCGGT 1 cut(s) 873
AspA2I CCTAGG 1 cut(s) 70
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 4 cut(s) 74, 407, 427, 439
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 682, 1025
AvaII GGWCC 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 70
BanI GGYRCC 1 cut(s) 44
BccI CCATC 3 cut(s) 258, 428, 877
BceAI ACGGC 5 cut(s) 32, 329, 541, 779, 816
BciT130I CCWGG 3 cut(s) 300, 660, 768
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 4 cut(s) 38, 702, 750, 1010
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 1051
BfoI RGCGCY 1 cut(s) 48
BglI GCCNNNNNGGC 2 cut(s) 425, 800
BglII AGATCT 1 cut(s) 639
BisI GCNGC 3 cut(s) 118, 397, 426
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 3 cut(s) 119, 398, 427
Bme1390I CCNGG 4 cut(s) 300, 369, 660, 768
Bme18I GGWCC 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 4 cut(s) 74, 407, 427, 439
BmiI GGNNCC 2 cut(s) 46, 872
BmrFI CCNGG 4 cut(s) 300, 369, 660, 768
BmsI GCATC 2 cut(s) 543, 1026
Bpu10I CCTNAGC 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 603
BsaHI GRCGYC 2 cut(s) 45, 318
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 70, 298, 435, 863
BsaWI WCCGGW 1 cut(s) 873
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 436, 684, 916
Bse118I RCCGGY 2 cut(s) 41, 873
Bse1I ACTGG 4 cut(s) 59, 167, 454, 1024
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 3 cut(s) 300, 660, 768
BseDI CCNNGG 4 cut(s) 70, 298, 435, 863
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 4 cut(s) 54, 436, 684, 916
BseMI GCAATG 1 cut(s) 36
BseNI ACTGG 4 cut(s) 59, 167, 454, 1024
BseRI GAGGAG 2 cut(s) 279, 768
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 4 cut(s) 344, 409, 428, 440
BshNI GGYRCC 1 cut(s) 44
BshTI ACCGGT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 4 cut(s) 42, 114, 368, 874
BslFI GGGAC 3 cut(s) 281, 282, 384
BslI CCNNNNNNNGG 4 cut(s) 54, 436, 684, 916
BsmAI GTCTC 4 cut(s) 38, 702, 750, 1010
BsmBI CGTCTC 2 cut(s) 702, 750
BsmFI GGGAC 3 cut(s) 281, 282, 384
BsnI GGCC 4 cut(s) 344, 409, 428, 440
Bso31I GGTCTC 1 cut(s) 38
Bsp143I GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
BspACI CCGC 6 cut(s) 27, 117, 129, 175, 396, 425
BspANI GGCC 4 cut(s) 344, 409, 428, 440
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 46, 872
BspPI GGATC 2 cut(s) 670, 752
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 41, 873
BsrI ACTGG 4 cut(s) 59, 167, 454, 1024
BssAI RCCGGY 2 cut(s) 41, 873
BssECI CCNNGG 4 cut(s) 70, 298, 435, 863
BssMI GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
BssNAI GTATAC 1 cut(s) 631
BssNI GRCGYC 2 cut(s) 45, 318
BssT1I CCWWGG 2 cut(s) 70, 435
Bst1107I GTATAC 1 cut(s) 631
Bst2UI CCWGG 3 cut(s) 300, 660, 768
Bst4CI ACNGT 3 cut(s) 855, 864, 961
BstACI GRCGYC 2 cut(s) 45, 318
BstBAI YACGTR 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 615, 773
BstDSI CCRYGG 1 cut(s) 863
BstEII GGTNACC 1 cut(s) 688
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 7 cut(s) 109, 192, 352, 594, 642, 665, 747
BstMAI GTCTC 4 cut(s) 38, 702, 750, 1010
BstMBI GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 3 cut(s) 425, 791, 800
BstNI CCWGG 3 cut(s) 300, 660, 768
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 4 cut(s) 298, 367, 658, 766
BstSFI CTRYAG 1 cut(s) 1051
BstUI CGCG 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 639, 662
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 2 cut(s) 639, 662
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 4 cut(s) 344, 409, 428, 440
BtgI CCRYGG 1 cut(s) 863
BtgZI GCGATG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 3 cut(s) 243, 447, 693
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 41, 873
Cfr13I GGNCC 4 cut(s) 74, 407, 427, 439
CseI GACGC 4 cut(s) 55, 326, 395, 767
Csp6I GTAC 2 cut(s) 209, 469
CspAI ACCGGT 1 cut(s) 873
CviAII CATG 2 cut(s) 293, 911
CviQI GTAC 2 cut(s) 209, 469
DdeI CTNAG 2 cut(s) 615, 773
DinI GGCGCC 1 cut(s) 46
DpnI GATC 7 cut(s) 108, 191, 351, 593, 641, 664, 746
DpnII GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 70, 435
Eco31I GGTCTC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 628
Eco91I GGTNACC 1 cut(s) 688
EcoO65I GGTNACC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 298, 658, 766
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 70, 435
EcoT22I ATGCAT 1 cut(s) 1041
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 70, 435
Esp3I CGTCTC 2 cut(s) 702, 750
FaeI CATG 2 cut(s) 296, 914
FalI AAGNNNNNCTT 4 cut(s) 495, 527, 880, 912
FaqI GGGAC 3 cut(s) 281, 282, 384
FatI CATG 2 cut(s) 292, 910
FauNDI CATATG 2 cut(s) 62, 1041
FblI GTMKAC 3 cut(s) 51, 222, 630
Fnu4HI GCNGC 3 cut(s) 118, 397, 426
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 118, 397, 426
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 46
GluI GCNGC 3 cut(s) 118, 397, 426
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 344, 409, 428, 440
HapII CCGG 4 cut(s) 42, 114, 368, 874
HgaI GACGC 4 cut(s) 55, 326, 395, 767
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 2 cut(s) 45, 318
Hin1II CATG 2 cut(s) 296, 914
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 2 cut(s) 488, 1068
HpaII CCGG 4 cut(s) 42, 114, 368, 874
HphI GGTGA 2 cut(s) 682, 1025
Hpy166II GTNNAC 3 cut(s) 52, 223, 631
Hpy188I TCNGA 6 cut(s) 106, 310, 637, 647, 1035, 1075
Hpy188III TCNNGA 2 cut(s) 383, 748
Hpy8I GTNNAC 3 cut(s) 52, 223, 631
Hpy99I CGWCG 3 cut(s) 224, 350, 533
HpyAV CCTTC 2 cut(s) 823, 882
HpyCH4III ACNGT 3 cut(s) 855, 864, 961
HpyCH4IV ACGT 5 cut(s) 227, 528, 572, 602, 732
HpyCH4V TGCA 4 cut(s) 24, 478, 525, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 791, 800
HpyF3I CTNAG 2 cut(s) 615, 773
HpySE526I ACGT 5 cut(s) 227, 528, 572, 602, 732
Hsp92I GRCGYC 2 cut(s) 45, 318
Hsp92II CATG 2 cut(s) 296, 914
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
LmnI GCTCC 3 cut(s) 581, 616, 952
LweI GCATC 2 cut(s) 543, 1026
MaeI CTAG 1 cut(s) 71
MaeII ACGT 5 cut(s) 227, 528, 572, 602, 732
MaeIII GTNAC 6 cut(s) 241, 445, 539, 605, 688, 796
MalI GATC 7 cut(s) 108, 191, 351, 593, 641, 664, 746
MboI GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
MboII GAAGA 7 cut(s) 163, 347, 634, 635, 731, 817, 1018
MflI RGATCY 2 cut(s) 639, 662
Mly113I GGCGCC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 5 cut(s) 112, 300, 746, 814, 1001
Mph1103I ATGCAT 1 cut(s) 1041
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 3 cut(s) 548, 878, 984
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 4 cut(s) 42, 114, 368, 874
MspR9I CCNGG 4 cut(s) 300, 369, 660, 768
MvaI CCWGG 3 cut(s) 300, 660, 768
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 425, 791, 800
NaeI GCCGGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 369
NdeI CATATG 2 cut(s) 62, 1041
NdeII GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 296, 914
NlaIV GGNNCC 2 cut(s) 46, 872
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 5 cut(s) 241, 445, 605, 688, 796
NsiI ATGCAT 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 678
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 9 cut(s) 194, 327, 379, 453, 515, 736, 925, 1023, 1045
PflFI GACNNNGTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 916
PfoI TCCNGGA 1 cut(s) 766
PinAI ACCGGT 1 cut(s) 873
PkrI GCNGC 3 cut(s) 119, 398, 427
Ple19I CGATCG 1 cut(s) 594
PluTI GGCGCC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 298, 658, 766
PspEI GGTNACC 1 cut(s) 688
PspGI CCWGG 3 cut(s) 298, 658, 766
PspN4I GGNNCC 2 cut(s) 46, 872
PspPI GGNCC 4 cut(s) 74, 407, 427, 439
PsuI RGATCY 2 cut(s) 639, 662
PsyI GACNNNGTC 1 cut(s) 218
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 2 cut(s) 210, 470
RsaNI GTAC 2 cut(s) 209, 469
RseI CAYNNNNRTG 1 cut(s) 359
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 548, 878, 984
SatI GCNGC 3 cut(s) 118, 397, 426
Sau3AI GATC 7 cut(s) 106, 189, 349, 591, 639, 662, 744
Sau96I GGNCC 4 cut(s) 74, 407, 427, 439
ScrFI CCNGG 4 cut(s) 300, 369, 660, 768
SfaNI GCATC 2 cut(s) 543, 1026
SfcI CTRYAG 1 cut(s) 1051
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 359
SsiI CCGC 6 cut(s) 27, 117, 129, 175, 396, 425
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 4 cut(s) 298, 367, 658, 766
StyI CCWWGG 2 cut(s) 70, 435
TaaI ACNGT 3 cut(s) 855, 864, 961
TaiI ACGT 5 cut(s) 230, 531, 575, 605, 735
TaqI TCGA 8 cut(s) 192, 222, 348, 561, 590, 594, 621, 747
TauI GCSGC 3 cut(s) 120, 399, 428
TfiI GAWTC 9 cut(s) 194, 327, 379, 453, 515, 736, 925, 1023, 1045
Tru1I TTAA 3 cut(s) 548, 878, 984
Tru9I TTAA 3 cut(s) 548, 878, 984
TscAI CASTG 3 cut(s) 250, 454, 700
TseFI GTSAC 5 cut(s) 241, 445, 605, 688, 796
Tsp45I GTSAC 5 cut(s) 241, 445, 605, 688, 796
TspDTI ATGAA 4 cut(s) 49, 579, 668, 959
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 3 cut(s) 250, 454, 700
Tth111I GACNNNGTC 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 916
VpaK11BI GGWCC 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 70
XmiI GTMKAC 3 cut(s) 51, 222, 630
XspI CTAG 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.