pycom08g00600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
506160 .. 507242
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00600.1

Sequence Viewer

Length: 1083 bp
ATGGACTCTCTCACCCTCTTTTGTACGGGCGCTCTCCTCGCCGGCGGGATCTATTGGTTTGTCTGCATTCTCGGCCCCGCCGAGCGAAAGGGGAAGCGCGCCGTAGATCTCTCCGGTGGCTCCATCTCCGCCGAGAAAGTTCAAGATAGCTACGACAAATATTGGTCCTTCTTCCGCCGCCCAAAAGAGATCGAAAGGGCTGAGAAAGTCCCCGACTTTGTAGACACCTTTTACAACTTAGTCACCGATATTTATGAGTGGGGTTGGGGGCAGTCCTTCCACTTCTCCCCGCACATCCCCGGTAAGTCCCACAAAGACGCCACGCGCCTCCACGAGGAGATGGCCGTCGATCTCATCGATGTCAAACCCGGAGACCGAATTCTCGACGTCGGATGCGGCGTGGGTGGCCCTATGCGTGCCATCGCGGCCCACTCGCGGGCCAACGTCACAGGGATCACGATCAACGAGTACCAGGTGAAACGCGCGCGTCTGCACAACAAGAAGGCCGGCCTCGACTCGCTCTGCGAGGTCGTATGCGGCAACTTCCTCGAGATGCCGTTCCCGGAGAACAGCTTTGACGGCGCGTACTCGATCGAGGCGACATGTCACGCGCCGAAGCTGGAGGAGGTGTACGCCGAGATCTTCCGGGTTCTGAAGCCGGGGGCTCTGTACGTGTCGTACGAGTGGGTGACGACAGACAAGTACAAGGGTGAGGACGCTGAACACGTGGAGGTCATTCAGGGAATCGAGAGAGGGGATGCCCTGCCGGGACTCAGGAGCTATACGGACATTGCGGAGACGGCGAGGAAGGTCGGGTTCGAGGTGGTGAAGGAGAAAGATCTGGCCAAGCCGCCGGCGCAGCCGTGGTGGAGTCGATTGAAGATGGGGAGGATCGCCTACTGGCGCAACCACATTCTGGTGACGGTGCTCGCCGCCGTCGGAATTGCACCAAAAGGAACCGTGGATGTGCACGAGATGCTGTTCAAAACCGCCGACTTTTTGACCAGGGGCGGCGAAACCGGAATCTTTAGTCCGATGCACATGATTCTCTGCCGGAAGCCCGATACAGCCAAATCATCTTAA

Protein Analysis

361

Amino Acids

40.21

Weight (kDa)

6.43

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 77 - 281 3.3e-15 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 110 - 228 1.6e-09 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 122 - 229 3.1e-16 Methyltransferase domain
Methyltransf_23 PF13489 122 - 277 1.4e-09 Methyltransferase domain
Methyltransf_25 PF13649 127 - 221 7.2e-20 Methyltransferase domain
Methyltransf_11 PF08241 128 - 224 3e-23 Methyltransferase domain
Methyltransf_12 PF08242 128 - 223 1.5e-11 Methyltransferase domain
Sterol_MT_C PF08498 291 - 354 1.3e-22 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 916
AccI GTMKAC 1 cut(s) 222
AccII CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
AclWI GGATC 3 cut(s) 56, 461, 899
AcoI YGGCCR 2 cut(s) 342, 843
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 674
AcvI CACGTG 1 cut(s) 727
AcyI GRCGYC 2 cut(s) 318, 387
AfaI GTAC 7 cut(s) 25, 470, 587, 632, 671, 680, 704
AfiI CCNNNNNNNGG 4 cut(s) 334, 435, 436, 916
AflIII ACRYGT 3 cut(s) 602, 672, 724
AgsI TTSAA 3 cut(s) 143, 880, 985
AjnI CCWGG 2 cut(s) 471, 1004
AluBI AGCT 4 cut(s) 150, 573, 619, 780
AluI AGCT 4 cut(s) 150, 573, 619, 780
Alw21I GWGCWC 2 cut(s) 930, 972
Alw26I GTCTC 2 cut(s) 366, 791
Alw44I GTGCAC 1 cut(s) 968
AlwI GGATC 3 cut(s) 56, 461, 899
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 8 cut(s) 73, 342, 406, 426, 438, 504, 508, 843
ApaLI GTGCAC 1 cut(s) 968
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 5 cut(s) 74, 165, 407, 427, 438
AsuC2I CCSGG 6 cut(s) 300, 369, 563, 647, 660, 768
AsuHPI GGTGA 7 cut(s) 4, 235, 487, 700, 722, 838, 931
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 845
BanII GRGCYC 1 cut(s) 667
BauI CACGAG 2 cut(s) 332, 971
BbrPI CACGTG 1 cut(s) 727
Bbv12I GWGCWC 2 cut(s) 930, 972
BbvI GCAGC 1 cut(s) 871
BccI CCATC 4 cut(s) 131, 334, 428, 877
BceAI ACGGC 7 cut(s) 86, 329, 541, 595, 816, 847, 920
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 2 cut(s) 473, 1006
BcnI CCSGG 6 cut(s) 300, 369, 563, 647, 660, 768
BcoDI GTCTC 2 cut(s) 366, 791
BfoI RGCGCY 1 cut(s) 33
BglI GCCNNNNNGGC 1 cut(s) 425
BglII AGATCT 3 cut(s) 106, 639, 838
BisI GCNGC 8 cut(s) 178, 397, 426, 538, 851, 860, 933, 1012
BlsI GCNGC 8 cut(s) 179, 398, 427, 539, 852, 861, 934, 1013
Bme1390I CCNGG 8 cut(s) 300, 369, 473, 563, 647, 660, 768, 1006
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 5 cut(s) 74, 165, 407, 427, 438
BmiI GGNNCC 3 cut(s) 76, 121, 958
BmrFI CCNGG 8 cut(s) 300, 369, 473, 563, 647, 660, 768, 1006
BmsI GCATC 5 cut(s) 383, 543, 748, 966, 1026
BpmI CTGGAG 1 cut(s) 641
BpuMI CCSGG 6 cut(s) 300, 369, 563, 647, 660, 768
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 2 cut(s) 673, 727
BsaBI GATNNNNATC 1 cut(s) 458
BsaHI GRCGYC 2 cut(s) 318, 387
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 5 cut(s) 298, 659, 863, 960, 1005
BsaWI WCCGGW 2 cut(s) 113, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 435, 436, 916
Bse118I RCCGGY 3 cut(s) 41, 506, 853
Bse1I ACTGG 1 cut(s) 905
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 2 cut(s) 473, 1006
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 5 cut(s) 298, 659, 863, 960, 1005
BseGI GGATG 4 cut(s) 294, 398, 763, 970
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 4 cut(s) 334, 435, 436, 916
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 2 cut(s) 192, 787
BseNI ACTGG 1 cut(s) 905
BsePI GCGCGC 2 cut(s) 97, 483
BseRI GAGGAG 3 cut(s) 26, 350, 638
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 1 cut(s) 871
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 8 cut(s) 75, 344, 408, 428, 440, 506, 510, 845
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 930, 972
BsiHKCI CYCGRG 1 cut(s) 548
BsiWI CGTACG 1 cut(s) 678
BslFI GGGAC 3 cut(s) 194, 292, 783
BslI CCNNNNNNNGG 4 cut(s) 334, 435, 436, 916
BsmAI GTCTC 2 cut(s) 366, 791
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 3 cut(s) 194, 292, 783
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 8 cut(s) 75, 344, 408, 428, 440, 506, 510, 845
Bso31I GGTCTC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 3 cut(s) 667, 930, 972
BspANI GGCC 8 cut(s) 75, 344, 408, 428, 440, 506, 510, 845
BspCNI CTCAG 2 cut(s) 193, 786
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
BspLI GGNNCC 3 cut(s) 76, 121, 958
BspPI GGATC 3 cut(s) 56, 461, 899
BspTNI GGTCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 3 cut(s) 41, 506, 853
BsrI ACTGG 1 cut(s) 905
BssAI RCCGGY 3 cut(s) 41, 506, 853
BssECI CCNNGG 5 cut(s) 298, 659, 863, 960, 1005
BssHII GCGCGC 2 cut(s) 97, 483
BssNI GRCGYC 2 cut(s) 318, 387
BssSI CACGAG 2 cut(s) 332, 971
Bst2BI CACGAG 2 cut(s) 332, 971
Bst2UI CCWGG 2 cut(s) 473, 1006
Bst4CI ACNGT 2 cut(s) 925, 961
BstACI GRCGYC 2 cut(s) 318, 387
BstAPI GCANNNNNTGC 1 cut(s) 976
BstBAI YACGTR 2 cut(s) 673, 727
BstC8I GCNNGC 8 cut(s) 43, 99, 417, 438, 485, 508, 855, 930
BstDEI CTNAG 3 cut(s) 201, 238, 773
BstDSI CCRYGG 2 cut(s) 863, 960
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 4 cut(s) 294, 398, 763, 970
BstFNI CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
BstH2I RGCGCY 1 cut(s) 33
BstMAI GTCTC 2 cut(s) 366, 791
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 9 cut(s) 38, 72, 405, 425, 579, 800, 856, 859, 976
BstNI CCWGG 2 cut(s) 473, 1006
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 8 cut(s) 298, 367, 471, 561, 645, 658, 766, 1004
BstSLI GKGCMC 1 cut(s) 972
BstUI CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
BstV1I GCAGC 1 cut(s) 871
BstX2I RGATCY 4 cut(s) 48, 106, 639, 838
BstYI RGATCY 4 cut(s) 48, 106, 639, 838
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 8 cut(s) 75, 344, 408, 428, 440, 506, 510, 845
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 2 cut(s) 863, 960
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 4 cut(s) 294, 398, 763, 970
Cac8I GCNNGC 8 cut(s) 43, 99, 417, 438, 485, 508, 855, 930
Cfr10I RCCGGY 3 cut(s) 41, 506, 853
Cfr13I GGNCC 5 cut(s) 74, 165, 407, 427, 438
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 3 cut(s) 326, 476, 725
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 7 cut(s) 24, 469, 586, 631, 670, 679, 703
CviAII CATG 2 cut(s) 603, 1042
CviQI GTAC 7 cut(s) 24, 469, 586, 631, 670, 679, 703
DdeI CTNAG 3 cut(s) 201, 238, 773
EaeI YGGCCR 2 cut(s) 342, 843
EciI GGCGGA 2 cut(s) 118, 164
Eco24I GRGCYC 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 674
Eco72I CACGTG 1 cut(s) 727
Eco88I CYCGRG 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 471, 1004
EcoT38I GRGCYC 1 cut(s) 667
Esp3I CGTCTC 1 cut(s) 791
FaeI CATG 2 cut(s) 606, 1045
FaiI YATR 6 cut(s) 255, 413, 535, 604, 783, 1043
FaqI GGGAC 3 cut(s) 194, 292, 783
FatI CATG 2 cut(s) 602, 1041
FauI CCCGC 4 cut(s) 38, 85, 297, 429
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 8 cut(s) 178, 397, 426, 538, 851, 860, 933, 1012
FokI GGATG 4 cut(s) 281, 405, 770, 977
FriOI GRGCYC 1 cut(s) 667
FseI GGCCGGCC 1 cut(s) 510
Fsp4HI GCNGC 8 cut(s) 178, 397, 426, 538, 851, 860, 933, 1012
GluI GCNGC 8 cut(s) 178, 397, 426, 538, 851, 860, 933, 1012
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 8 cut(s) 75, 344, 408, 428, 440, 506, 510, 845
HgaI GACGC 3 cut(s) 326, 476, 725
Hin1I GRCGYC 2 cut(s) 318, 387
Hin1II CATG 2 cut(s) 606, 1045
HinfI GANTC 7 cut(s) 5, 515, 744, 771, 871, 1023, 1045
HphI GGTGA 7 cut(s) 4, 235, 487, 700, 722, 838, 931
Hpy166II GTNNAC 3 cut(s) 223, 631, 970
Hpy188I TCNGA 4 cut(s) 392, 654, 941, 1035
Hpy188III TCNNGA 6 cut(s) 143, 383, 457, 550, 748, 775
Hpy8I GTNNAC 3 cut(s) 223, 631, 970
Hpy99I CGWCG 4 cut(s) 350, 389, 392, 941
HpyAV CCTTC 5 cut(s) 178, 286, 496, 802, 823
HpyCH4III ACNGT 2 cut(s) 925, 961
HpyCH4IV ACGT 4 cut(s) 387, 444, 672, 726
HpyCH4V TGCA 5 cut(s) 66, 493, 947, 970, 1039
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 72, 405, 425, 579, 800, 856, 859, 976
HpyF3I CTNAG 3 cut(s) 201, 238, 773
HpySE526I ACGT 4 cut(s) 387, 444, 672, 726
Hsp92I GRCGYC 2 cut(s) 318, 387
Hsp92II CATG 2 cut(s) 606, 1045
KroI GCCGGC 3 cut(s) 41, 506, 853
KroNI GCCGGC 3 cut(s) 43, 508, 855
LmnI GCTCC 2 cut(s) 125, 777
Lsp1109I GCAGC 1 cut(s) 871
LweI GCATC 5 cut(s) 383, 543, 748, 966, 1026
MabI ACCWGGT 1 cut(s) 471
MaeII ACGT 4 cut(s) 387, 444, 672, 726
MaeIII GTNAC 5 cut(s) 241, 445, 605, 688, 919
MauBI CGCGCGCG 1 cut(s) 483
MboII GAAGA 3 cut(s) 163, 634, 892
MflI RGATCY 4 cut(s) 48, 106, 639, 838
MhlI GDGCHC 3 cut(s) 667, 930, 972
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 2 cut(s) 378, 942
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 3 cut(s) 509, 765, 880
MmeI TCCRAC 2 cut(s) 370, 919
Mox20I TGGCCA 1 cut(s) 845
MreI CGCCGGCG 2 cut(s) 41, 853
MroNI GCCGGC 3 cut(s) 41, 506, 853
MscI TGGCCA 1 cut(s) 845
MseI TTAA 1 cut(s) 1081
MslI CAYNNNNRTG 1 cut(s) 917
Msp20I TGGCCA 1 cut(s) 845
MspR9I CCNGG 8 cut(s) 300, 369, 473, 563, 647, 660, 768, 1006
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 2 cut(s) 473, 1006
MvnI CGCG 9 cut(s) 99, 325, 425, 436, 483, 485, 487, 584, 611
MwoI GCNNNNNNNGC 9 cut(s) 38, 72, 405, 425, 579, 800, 856, 859, 976
NaeI GCCGGC 3 cut(s) 43, 508, 855
NciI CCSGG 6 cut(s) 300, 369, 563, 647, 660, 768
NgoMIV GCCGGC 3 cut(s) 41, 506, 853
NlaIII CATG 2 cut(s) 606, 1045
NlaIV GGNNCC 3 cut(s) 76, 121, 958
NmeAIII GCCGAG 4 cut(s) 51, 106, 157, 661
NmuCI GTSAC 5 cut(s) 241, 445, 605, 688, 919
NspI RCATGY 1 cut(s) 606
PaeR7I CTCGAG 1 cut(s) 548
PauI GCGCGC 2 cut(s) 97, 483
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 6 cut(s) 78, 354, 396, 596, 678, 723
PctI GAATGC 1 cut(s) 66
PdiI GCCGGC 3 cut(s) 43, 508, 855
PfeI GAWTC 3 cut(s) 744, 1023, 1045
Pfl23II CGTACG 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 916
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 8 cut(s) 179, 398, 427, 539, 852, 861, 934, 1013
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 3 cut(s) 509, 765, 879
PmaCI CACGTG 1 cut(s) 727
PmlI CACGTG 1 cut(s) 727
PpsI GAGTC 3 cut(s) 509, 765, 879
Ppu21I YACGTR 2 cut(s) 673, 727
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 471, 1004
PspCI CACGTG 1 cut(s) 727
PspGI CCWGG 2 cut(s) 471, 1004
PspLI CGTACG 1 cut(s) 678
PspN4I GGNNCC 3 cut(s) 76, 121, 958
PspPI GGNCC 5 cut(s) 74, 165, 407, 427, 438
PsuI RGATCY 4 cut(s) 48, 106, 639, 838
PteI GCGCGC 2 cut(s) 97, 483
PvuI CGATCG 1 cut(s) 594
RigI GGCCGGCC 1 cut(s) 510
RsaI GTAC 7 cut(s) 25, 470, 587, 632, 671, 680, 704
RsaNI GTAC 7 cut(s) 24, 469, 586, 631, 670, 679, 703
RseI CAYNNNNRTG 1 cut(s) 917
SaqAI TTAA 1 cut(s) 1081
SatI GCNGC 8 cut(s) 178, 397, 426, 538, 851, 860, 933, 1012
Sau96I GGNCC 5 cut(s) 74, 165, 407, 427, 438
SchI GAGTC 3 cut(s) 509, 765, 880
ScrFI CCNGG 8 cut(s) 300, 369, 473, 563, 647, 660, 768, 1006
SduI GDGCHC 3 cut(s) 667, 930, 972
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 5 cut(s) 383, 543, 748, 966, 1026
Sfr274I CTCGAG 1 cut(s) 548
SgrAI CRCCGGYG 2 cut(s) 41, 853
SinI GGWCC 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 2 cut(s) 378, 942
SspI AATATT 1 cut(s) 161
StyD4I CCNGG 8 cut(s) 298, 367, 471, 561, 645, 658, 766, 1004
TaaI ACNGT 2 cut(s) 925, 961
TaiI ACGT 4 cut(s) 390, 447, 675, 729
TaqII GACCGA 1 cut(s) 390
TasI AATT 2 cut(s) 378, 942
TatI WGTACW 1 cut(s) 702
TauI GCSGC 7 cut(s) 180, 399, 428, 540, 853, 935, 1014
TfiI GAWTC 3 cut(s) 744, 1023, 1045
Tru1I TTAA 1 cut(s) 1081
Tru9I TTAA 1 cut(s) 1081
TseFI GTSAC 5 cut(s) 241, 445, 605, 688, 919
TseI GCWGC 1 cut(s) 859
Tsp45I GTSAC 5 cut(s) 241, 445, 605, 688, 919
TspGWI ACGGA 1 cut(s) 800
Van91I CCANNNNNTGG 1 cut(s) 916
VneI GTGCAC 1 cut(s) 968
VpaK11BI GGWCC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 222
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.