Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004681

Physical Location & Seq

Genomic Coordinates Reverse (-)

47507629 .. 47508388

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAATGTTTGCTCCAAATGTACCCTTCAAATAGGGGATGAAGTGGAAGTGTGCTGCAATTCGGAAGGATTTCTTGGCTCATATTGGAAAGCAATCATAGTCGCAAATATGGGTACGAACTACTTGGTTGAGTACAAGGATTTTGTGGACGAAGATAATGAATTTACACCTTTACAAGAGATTGTCATAGCGAAAGATGTCCGGCCTATACCACCTGTCATTGTGCCATCTAAATATTCTAGTCTTAAAGGGTATAGGGTCGATGCATTGATCAATGACGGTTGGTGGGTTGGAACTATTTCTAGGAGGAAAGACCCTGACCACTACTTCGTTTTCTTTGAAACCACTGGAATAGAGACTCTTTACCCGCTTTCAAAGTTGAGGTTTCATATGGAGTGGCTCAATGGGGTCTGGGTTCCTCCCAACAAAAGGTGCATCCCAATTTCTTCGAAAAAGGGGTTCGCACCAACTTCTTCGAAGAAACCGAAGAAAATGGGTGCACCAGCTTTTTCAAAGAAGGAGTTCACACCAGTTTCTTTTGAGGAGAGGAGCGAACTCATGGAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0003838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006275 GO:0006629 GO:0006694 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008156 GO:0008168 GO:0008169 GO:0008202 GO:0008610 GO:0008757 GO:0009058 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010051 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0012505 GO:0016049 GO:0016125 GO:0016126 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0032875 GO:0032876 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00100 ko01110 map00100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Sterol_MT_C

Protein Analysis

189

Amino Acids

21.57

Weight (kDa)

6.74

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	12 - 72	8.1e-18	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20330 AT1G76090
fragaria_vesca	FvH4_2g37920
malus_domestica	MD08G1007400.v1.1 MD15G1006600.v1.1
prunus_persica	Prupe.1G359200_v2.0.a1
pyrus_communis	pycom08g00600 pycom15g00520
rosa_chinensis	RchiOBHm_Chr4g0386051 RchiOBHm_Chr6g0303691
rosa_laevigata	RLG00000010176 RLG00000011056
rosa_multiflora	Rmu_co8442993.1_g000001 Rmu_sc0000472.1_g000013 Rmu_sc0002413.1_g000008 Rmu_sc0026342.1_g000001 Rmu_ssc0000114.1_g000012
rosa_roxburghii	Rroxscaffold_5G00333810 Rroxscaffold_7G00164480
rosa_rugosa	Rorug03G0306500 Rorug06G0324000
rosa_samantha	Rh4AG010400 Rh4BG007500 Rh4CG011100 Rh4DG008800 Rh6AG438300 Rh6BG464800 Rh6CG450600 Rh6DG437200
rosa_wichuraiana	Rw4G000100 Rw6G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	3 cut(s)	22, 115, 134
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	29, 341, 375, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	498
AoxI	GGCC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	3 cut(s)	69, 298, 521
AsuII	TTCGAA	2 cut(s)	449, 476
BaeGI	GKGCMC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	240, 303
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	2 cut(s)	253, 444
Bpu14I	TTCGAA	2 cut(s)	449, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	352, 530
BseGI	GGATG	2 cut(s)	43, 435
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	352, 530
BseRI	GAGGAG	2 cut(s)	557, 562
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	205
Bsp119I	TTCGAA	2 cut(s)	449, 476
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	417
BspT104I	TTCGAA	2 cut(s)	449, 476
BsrI	ACTGG	2 cut(s)	352, 530
BssMI	GATC	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	281
BstBI	TTCGAA	2 cut(s)	449, 476
BstF5I	GGATG	2 cut(s)	43, 435
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	43, 435
BtsIMutI	CAGTG	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	21, 114, 133
CviAII	CATG	1 cut(s)	559
CviJI	RGCY	4 cut(s)	78, 205, 400, 506
CviKI_1	RGCY	4 cut(s)	78, 205, 400, 506
CviQI	GTAC	3 cut(s)	21, 114, 133
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	1 cut(s)	562
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	1 cut(s)	558
FauI	CCCGC	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	2 cut(s)	50, 422
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	240, 303
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	1 cut(s)	562
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	148, 500, 525
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	3 cut(s)	148, 500, 525
HpyAV	CCTTC	3 cut(s)	35, 59, 511
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	57, 266, 435, 500
Hsp92II	CATG	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	17, 549
LpnPI	CCDG	7 cut(s)	215, 228, 330, 333, 397, 516, 543
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	253, 444
MaeI	CTAG	2 cut(s)	240, 303
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	5 cut(s)	164, 438, 465, 490, 499
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	58, 161, 441, 563
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	300, 375, 429, 535, 540
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	3 cut(s)	69, 298, 521
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	202
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	268
NspV	TTCGAA	2 cut(s)	449, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PdmI	GAANNNNTTC	3 cut(s)	69, 298, 521
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	417
RsaI	GTAC	3 cut(s)	22, 115, 134
RsaNI	GTAC	3 cut(s)	21, 114, 133
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	5 cut(s)	172, 217, 386, 434, 508
SfaNI	GCATC	2 cut(s)	253, 444
SfuI	TTCGAA	2 cut(s)	449, 476
Sse9I	AATT	4 cut(s)	58, 161, 441, 563
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	2 cut(s)	240, 303
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	261, 449, 476
TasI	AATT	4 cut(s)	58, 161, 441, 563
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	4 cut(s)	17, 54, 174, 377
TspRI	CASTG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	161
XmnI	GAANNNNTTC	3 cut(s)	69, 298, 521
XspI	CTAG	2 cut(s)	240, 303
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.