FvH4_2g37920
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
27520891 .. 27522459
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37920.t1

Sequence Viewer

Length: 1068 bp
ATGGACTCTCTCACCCTCTTCTGTACCGGCGCTCTCCTCGCCGGTGGGCTCTACTGGTTCGTCTGCGTTCTCGGCCCTGCCGAGCGACAAGGCAAGCGTGCCGCAGATCTCTCCGGTGGCTCCATCTCCGCCGAAAAAGTCCAAGACAGTTACAACCAGTACTGGTCTTTCTTCCGTCGACCTAAGCAGATCGAAGCCTCCGAGAAAGTCCCTGACTTCGTAGACACCTTTTACAACCTCGTAACTGATATCTACGAGTGGGGTTGGGGTCAGTCCTTCCACTTCTCCCCCTCAGTCGCCGGCAAGTCCCACAAGGACGCCACGCGCCTCCACGAGGAGATGGCCGTCGATCTTATCAACGTCAAGCCCGGACAACGCATCCTCGACGTCGGATGCGGCGTTGGCGGGCCGATGCGCGCGATTGCGGCTCACTCGCGGGCCAACGTCGTGGGGATAACAATCAACGAGTACCAGGTGAAGAGGGCGCGTCTGCACAACAAGAAGGCCGGGCTCGATTCTCTATGTGAAGTTGTCTGCGGTAACTTTCTAGAGATGCCGTTCCCGGAGAACAGCTTCGACGGCGCGTACTCGATCGAGGCGACGTGCCACGCGCCGAAGCTGGAGGAGGTGTACGCCGAGATCTTTAGGGTTCTGAAGCCAGGAGCGCTGTACGTCTCGTACGAGTGGGTGACGACCGACAAGTACAACGGTGACGACGCGGAGCACAGGGAGGTGATTCAGGGGATCGAGAGAGGGGACGCGTTGCCGGGGCTGAGGGCACAGGTGGACATCGCCGAGGCGGCGAGGAAGGTAGGGTTTGAAGTGGTGAAGGAGAAGGATCTGGCAAAGCCTCCAAGTGAGGCATGGTGGACTAGGCTGAAGATGGGCAGGATCGCCTACTGGCGCAACCACATTCTGGTTACCGTGCTCTCCTTCTTGGGAATTGCGCCGAAAGGAACGGTGGATGTTCACGAGATGCTGTTTGTCACCGCTGACTATTTGACCAGAGGTGGTGAGACCGGAATCTTCACTCCGATGCATATGATCCTCTGCCGGAAGCCGGAATAG

Protein Analysis

356

Amino Acids

39.61

Weight (kDa)

6.1

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 74 - 281 2.3e-15 Mycolic acid cyclopropane synthetase
Ubie_methyltran PF01209 109 - 228 1.3e-10 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 122 - 229 2.3e-16 Methyltransferase domain
Methyltransf_23 PF13489 122 - 277 4.6e-09 Methyltransferase domain
Methyltransf_25 PF13649 127 - 221 9.7e-20 Methyltransferase domain
Methyltransf_11 PF08241 128 - 224 4.1e-23 Methyltransferase domain
Methyltransf_12 PF08242 128 - 223 1.8e-11 Methyltransferase domain
Sterol_MT_C PF08498 291 - 355 1e-24 Sterol methyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 916
AccI GTMKAC 2 cut(s) 178, 222
AccII CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
AclWI GGATC 4 cut(s) 752, 846, 899, 1039
AcoI YGGCCR 1 cut(s) 342
AcuI CTGAAG 2 cut(s) 674, 899
AcyI GRCGYC 2 cut(s) 318, 387
AfaI GTAC 8 cut(s) 25, 161, 470, 587, 632, 671, 680, 704
AfeI AGCGCT 1 cut(s) 666
AfiI CCNNNNNNNGG 3 cut(s) 334, 916, 1060
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 1 cut(s) 821
AjiI CACGTC 1 cut(s) 603
AjnI CCWGG 2 cut(s) 471, 658
AluBI AGCT 2 cut(s) 573, 619
AluI AGCT 2 cut(s) 573, 619
Alw21I GWGCWC 2 cut(s) 726, 930
Alw26I GTCTC 2 cut(s) 679, 1010
AlwI GGATC 4 cut(s) 752, 846, 899, 1039
Aor51HI AGCGCT 1 cut(s) 666
AoxI GGCC 5 cut(s) 73, 342, 407, 438, 504
Asp700I GAANNNNTTC 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 74, 407, 438
AsuC2I CCSGG 4 cut(s) 369, 508, 563, 768
AsuHPI GGTGA 8 cut(s) 4, 487, 700, 722, 745, 838, 979, 1025
BaeGI GKGCMC 1 cut(s) 781
BanII GRGCYC 2 cut(s) 51, 513
BauI CACGAG 2 cut(s) 332, 971
Bbv12I GWGCWC 2 cut(s) 726, 930
BbvCI CCTCAGC 1 cut(s) 773
BccI CCATC 3 cut(s) 131, 334, 877
BceAI ACGGC 3 cut(s) 329, 541, 595
BciT130I CCWGG 2 cut(s) 473, 660
BcnI CCSGG 4 cut(s) 369, 508, 563, 768
BcoDI GTCTC 2 cut(s) 679, 1010
BfaI CTAG 2 cut(s) 548, 873
BfoI RGCGCY 2 cut(s) 33, 668
BglI GCCNNNNNGGC 1 cut(s) 800
BglII AGATCT 2 cut(s) 106, 639
BisI GCNGC 4 cut(s) 102, 397, 426, 801
BlsI GCNGC 4 cut(s) 103, 398, 427, 802
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 6 cut(s) 369, 473, 508, 563, 660, 768
BmgBI CACGTC 1 cut(s) 603
BmgT120I GGNCC 3 cut(s) 74, 407, 438
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 6 cut(s) 369, 473, 508, 563, 660, 768
BmsI GCATC 6 cut(s) 383, 387, 402, 543, 966, 1026
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 2 cut(s) 183, 773
BpuMI CCSGG 4 cut(s) 369, 508, 563, 768
BsaBI GATNNNNATC 1 cut(s) 458
BsaHI GRCGYC 2 cut(s) 318, 387
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 2 cut(s) 767, 795
BsaWI WCCGGW 2 cut(s) 113, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 916, 1060
Bse118I RCCGGY 3 cut(s) 26, 41, 299
Bse1I ACTGG 4 cut(s) 59, 157, 167, 905
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 2 cut(s) 473, 660
BseDI CCNNGG 2 cut(s) 767, 795
BseGI GGATG 3 cut(s) 378, 398, 970
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 334, 916, 1060
BseMII CTCAG 2 cut(s) 306, 764
BseNI ACTGG 4 cut(s) 59, 157, 167, 905
BsePI GCGCGC 1 cut(s) 415
BseRI GAGGAG 3 cut(s) 26, 350, 638
BseSI GKGCMC 1 cut(s) 781
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
Bsh1285I CGRYCG 2 cut(s) 594, 696
BshFI GGCC 5 cut(s) 75, 344, 409, 440, 506
BsiEI CGRYCG 2 cut(s) 594, 696
BsiHKAI GWGCWC 2 cut(s) 726, 930
BsiWI CGTACG 1 cut(s) 678
BslFI GGGAC 3 cut(s) 194, 292, 770
BslI CCNNNNNNNGG 3 cut(s) 334, 916, 1060
BsmAI GTCTC 2 cut(s) 679, 1010
BsmBI CGTCTC 1 cut(s) 679
BsmFI GGGAC 3 cut(s) 194, 292, 770
BsnI GGCC 5 cut(s) 75, 344, 409, 440, 506
Bso31I GGTCTC 1 cut(s) 1010
Bsp1286I GDGCHC 5 cut(s) 51, 513, 726, 781, 930
Bsp143I GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
BspANI GGCC 5 cut(s) 75, 344, 409, 440, 506
BspCNI CTCAG 2 cut(s) 305, 765
BspFNI CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 4 cut(s) 752, 846, 899, 1039
BspTNI GGTCTC 1 cut(s) 1010
BsrFI RCCGGY 3 cut(s) 26, 41, 299
BsrI ACTGG 4 cut(s) 59, 157, 167, 905
BssAI RCCGGY 3 cut(s) 26, 41, 299
BssECI CCNNGG 2 cut(s) 767, 795
BssHII GCGCGC 1 cut(s) 415
BssMI GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
BssNI GRCGYC 2 cut(s) 318, 387
BssSI CACGAG 2 cut(s) 332, 971
Bst2BI CACGAG 2 cut(s) 332, 971
Bst2UI CCWGG 2 cut(s) 473, 660
Bst4CI ACNGT 4 cut(s) 149, 710, 925, 961
Bst6I CTCTTC 2 cut(s) 23, 473
BstACI GRCGYC 2 cut(s) 318, 387
BstC8I GCNNGC 6 cut(s) 95, 99, 301, 407, 417, 438
BstDEI CTNAG 3 cut(s) 183, 292, 773
BstEII GGTNACC 1 cut(s) 919
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 3 cut(s) 378, 398, 970
BstFNI CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
BstH2I RGCGCY 2 cut(s) 33, 668
BstKTI GATC 9 cut(s) 109, 192, 352, 594, 642, 747, 841, 894, 1047
BstMAI GTCTC 2 cut(s) 679, 1010
BstMBI GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
BstMCI CGRYCG 2 cut(s) 594, 696
BstMWI GCNNNNNNNGC 7 cut(s) 38, 72, 402, 425, 579, 664, 800
BstNI CCWGG 2 cut(s) 473, 660
BstPI GGTNACC 1 cut(s) 919
BstSCI CCNGG 6 cut(s) 367, 471, 506, 561, 658, 766
BstSLI GKGCMC 1 cut(s) 781
BstUI CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
BstX2I RGATCY 3 cut(s) 106, 639, 838
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 3 cut(s) 106, 639, 838
BsuRI GGCC 5 cut(s) 75, 344, 409, 440, 506
BtgZI GCGATG 1 cut(s) 775
BtrI CACGTC 1 cut(s) 603
BtsCI GGATG 3 cut(s) 378, 398, 970
Cac8I GCNNGC 6 cut(s) 95, 99, 301, 407, 417, 438
Cfr10I RCCGGY 3 cut(s) 26, 41, 299
Cfr13I GGNCC 3 cut(s) 74, 407, 438
CseI GACGC 4 cut(s) 326, 476, 725, 767
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 8 cut(s) 24, 160, 469, 586, 631, 670, 679, 703
CviAII CATG 1 cut(s) 864
CviQI GTAC 8 cut(s) 24, 160, 469, 586, 631, 670, 679, 703
DdeI CTNAG 3 cut(s) 183, 292, 773
DpnI GATC 9 cut(s) 108, 191, 351, 593, 641, 746, 840, 893, 1046
DpnII GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 23, 473
EarI CTCTTC 2 cut(s) 23, 473
EciI GGCGGA 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 51, 513
Eco31I GGTCTC 1 cut(s) 1010
Eco32I GATATC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 674, 899
Eco91I GGTNACC 1 cut(s) 919
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 919
EcoRII CCWGG 2 cut(s) 471, 658
EcoRV GATATC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 1041
EcoT38I GRGCYC 2 cut(s) 51, 513
Esp3I CGTCTC 1 cut(s) 679
FaeI CATG 1 cut(s) 867
FaiI YATR 4 cut(s) 523, 865, 1041, 1043
FaqI GGGAC 3 cut(s) 194, 292, 770
FatI CATG 1 cut(s) 863
FauI CCCGC 2 cut(s) 398, 429
FauNDI CATATG 1 cut(s) 1041
FblI GTMKAC 2 cut(s) 178, 222
Fnu4HI GCNGC 4 cut(s) 102, 397, 426, 801
FokI GGATG 3 cut(s) 365, 405, 977
FriOI GRGCYC 2 cut(s) 51, 513
Fsp4HI GCNGC 4 cut(s) 102, 397, 426, 801
FspBI CTAG 2 cut(s) 548, 873
GluI GCNGC 4 cut(s) 102, 397, 426, 801
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 2 cut(s) 33, 668
HaeIII GGCC 5 cut(s) 75, 344, 409, 440, 506
HgaI GACGC 4 cut(s) 326, 476, 725, 767
Hin1I GRCGYC 2 cut(s) 318, 387
Hin1II CATG 1 cut(s) 867
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 4 cut(s) 5, 515, 736, 1023
HphI GGTGA 8 cut(s) 4, 487, 700, 722, 745, 838, 979, 1025
Hpy166II GTNNAC 6 cut(s) 179, 223, 631, 787, 870, 970
Hpy188I TCNGA 4 cut(s) 202, 392, 654, 1035
Hpy188III TCNNGA 3 cut(s) 548, 748, 971
Hpy8I GTNNAC 6 cut(s) 179, 223, 631, 787, 870, 970
Hpy99I CGWCG 8 cut(s) 180, 350, 389, 392, 449, 581, 604, 719
HpyAV CCTTC 6 cut(s) 286, 496, 802, 823, 829, 943
HpyCH4III ACNGT 4 cut(s) 149, 710, 925, 961
HpyCH4IV ACGT 5 cut(s) 360, 387, 444, 602, 672
HpyCH4V TGCA 2 cut(s) 493, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 72, 402, 425, 579, 664, 800
HpyF3I CTNAG 3 cut(s) 183, 292, 773
HpySE526I ACGT 5 cut(s) 360, 387, 444, 602, 672
Hsp92I GRCGYC 2 cut(s) 318, 387
Hsp92II CATG 1 cut(s) 867
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
LmnI GCTCC 3 cut(s) 125, 662, 721
LweI GCATC 6 cut(s) 383, 387, 402, 543, 966, 1026
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 2 cut(s) 548, 873
MaeII ACGT 5 cut(s) 360, 387, 444, 602, 672
MaeIII GTNAC 7 cut(s) 149, 241, 539, 688, 710, 919, 985
MalI GATC 9 cut(s) 108, 191, 351, 593, 641, 746, 840, 893, 1046
MboI GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
MboII GAAGA 5 cut(s) 10, 163, 490, 892, 1018
MflI RGATCY 3 cut(s) 106, 639, 838
MhlI GDGCHC 5 cut(s) 51, 513, 726, 781, 930
MluCI AATT 1 cut(s) 942
MluI ACGCGT 1 cut(s) 759
MmeI TCCRAC 1 cut(s) 370
Mph1103I ATGCAT 1 cut(s) 1041
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 1 cut(s) 992
MspR9I CCNGG 6 cut(s) 369, 473, 508, 563, 660, 768
MvaI CCWGG 2 cut(s) 473, 660
MvnI CGCG 9 cut(s) 325, 417, 419, 436, 487, 584, 611, 719, 761
MwoI GCNNNNNNNGC 7 cut(s) 38, 72, 402, 425, 579, 664, 800
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 4 cut(s) 369, 508, 563, 768
NdeI CATATG 1 cut(s) 1041
NdeII GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 867
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 4 cut(s) 51, 106, 661, 820
NmuCI GTSAC 3 cut(s) 688, 710, 985
NsiI ATGCAT 1 cut(s) 1041
PauI GCGCGC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 5 cut(s) 78, 198, 396, 596, 678
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 3 cut(s) 515, 736, 1023
Pfl23II CGTACG 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 916
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 4 cut(s) 103, 398, 427, 802
Ple19I CGATCG 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 471, 658
PspEI GGTNACC 1 cut(s) 919
PspGI CCWGG 2 cut(s) 471, 658
PspLI CGTACG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 74, 407, 438
PsuI RGATCY 3 cut(s) 106, 639, 838
PteI GCGCGC 1 cut(s) 415
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 8 cut(s) 25, 161, 470, 587, 632, 671, 680, 704
RsaNI GTAC 8 cut(s) 24, 160, 469, 586, 631, 670, 679, 703
RseI CAYNNNNRTG 1 cut(s) 1034
SalI GTCGAC 1 cut(s) 177
SatI GCNGC 4 cut(s) 102, 397, 426, 801
Sau3AI GATC 9 cut(s) 106, 189, 349, 591, 639, 744, 838, 891, 1044
Sau96I GGNCC 3 cut(s) 74, 407, 438
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 6 cut(s) 369, 473, 508, 563, 660, 768
SduI GDGCHC 5 cut(s) 51, 513, 726, 781, 930
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 6 cut(s) 383, 387, 402, 543, 966, 1026
SgrAI CRCCGGYG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 1034
Sse9I AATT 1 cut(s) 942
SspMI CTAG 2 cut(s) 548, 873
StyD4I CCNGG 6 cut(s) 367, 471, 506, 561, 658, 766
TaaI ACNGT 4 cut(s) 149, 710, 925, 961
TaiI ACGT 5 cut(s) 363, 390, 447, 605, 675
TaqI TCGA 9 cut(s) 178, 192, 348, 384, 513, 576, 590, 594, 747
TaqII GACCGA 1 cut(s) 710
TasI AATT 1 cut(s) 942
TatI WGTACW 2 cut(s) 159, 702
TauI GCSGC 4 cut(s) 104, 399, 428, 803
TfiI GAWTC 3 cut(s) 515, 736, 1023
TseFI GTSAC 3 cut(s) 688, 710, 985
Tsp45I GTSAC 3 cut(s) 688, 710, 985
TspGWI ACGGA 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 916
XagI CCTNNNNNAGG 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XmiI GTMKAC 2 cut(s) 178, 222
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 2 cut(s) 548, 873
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.