AT1G21090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010509
Physical Location & Seq
Forward (+)
7384560 .. 7386580
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21090.2

Sequence Viewer

Length: 729 bp
ATGGGTTGCTCTCAGAAACATCTCACCTCAATGCTCTTCTTCTACTTCTTTTGCTTCCTCTCTCTTTTCTCTCGCCCTTCTCTTTCCGCCACGTTTCTCGTCGACGGTGTCTCTGTCTGGAAATCCCCCACTGTTCATACCGGCGACTCTGTTATTTTCAGACATAAGTACGGATACGATCTCTACATCTTCAGAAACAAAGATGCATTCAATGTCTGCAACTTTACTCAAGCCACTCTTCTTACTAAACCTAATTCCACTTCCTTCACGTGGTATCCATCAAGAACAGGCTCTTACTACTTTTCCTTCACAAACAACACATCTCTTCCCAAAACATGCCAACTCAACCAGAAGCTCACAGTCCAAGTCATCCTCGCCGCGGCATCACCGCCATCGCAACCACCAGCAACTGCCCCTGTTCCGGTTTCGGAAGGAGGAGTGATCTCATCTCCTTCTTCTTACCCTTGGCCATTAGGTCCTAGAGAAGGTTCAGCTTTCTCTCCGGGACCATCCCCATCAGAGATCACGTCAGTGACAGTCCCTGGTAAAGACGGAGTTCCATTCATCAACAGTAATCCGGCAGTTCCTCTTCCTACCGGAGATGTCGACTCTACTTCCATTAACCCTTTACCAACTTCCACTAATTCAGCTCATCAGGTGATGATGATGACATTAACGGTGAAGCTAGGTTTGTGTTGTGTAGCCATGTTTCTTTTTCTTGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.22

Weight (kDa)

8.74

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 102, 606
AccII CGCG 1 cut(s) 380
AciI CCGC 4 cut(s) 87, 378, 380, 389
AcoI YGGCCR 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 175
AcvI CACGTG 1 cut(s) 270
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 270, 379, 421, 485
AgsI TTSAA 1 cut(s) 211
AjiI CACGTC 1 cut(s) 528
AjnI CCWGG 1 cut(s) 541
AleI CACNNNNGTG 1 cut(s) 530
AluBI AGCT 4 cut(s) 355, 494, 650, 685
AluI AGCT 4 cut(s) 355, 494, 650, 685
Alw26I GTCTC 1 cut(s) 115
AlwNI CAGNNNCTG 2 cut(s) 410, 542
AoxI GGCC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 476, 506
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 4 cut(s) 16, 378, 670, 691
AvaII GGWCC 2 cut(s) 476, 506
BalI TGGCCA 1 cut(s) 469
BbrPI CACGTG 1 cut(s) 270
BccI CCATC 4 cut(s) 286, 400, 517, 523
BciT130I CCWGG 1 cut(s) 543
BciVI GTATCC 2 cut(s) 167, 285
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 480, 686
BfmI CTRYAG 1 cut(s) 725
BfuI GTATCC 2 cut(s) 167, 285
BisI GCNGC 2 cut(s) 378, 381
BlsI GCNGC 2 cut(s) 379, 382
Bme1390I CCNGG 2 cut(s) 504, 543
Bme18I GGWCC 2 cut(s) 476, 506
BmgBI CACGTC 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 476, 506
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 2 cut(s) 504, 543
BmsI GCATC 2 cut(s) 193, 392
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 378, 464, 541
BsaWI WCCGGW 2 cut(s) 421, 596
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 379, 421, 485
Bse118I RCCGGY 1 cut(s) 140
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 378, 464, 541
BseGI GGATG 2 cut(s) 369, 509
BseLI CCNNNNNNNGG 4 cut(s) 270, 379, 421, 485
BseMII CTCAG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 469
BsiSI CCGG 5 cut(s) 141, 422, 503, 578, 597
BslFI GGGAC 2 cut(s) 519, 524
BslI CCNNNNNNNGG 4 cut(s) 270, 379, 421, 485
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 519, 524
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 469
Bsp143I GATC 3 cut(s) 178, 441, 522
BspACI CCGC 4 cut(s) 87, 378, 380, 389
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 378, 464, 541
BssMI GATC 3 cut(s) 178, 441, 522
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 6 cut(s) 107, 133, 361, 538, 572, 679
Bst6I CTCTTC 4 cut(s) 41, 243, 330, 594
BstBAI YACGTR 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 369, 509
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 3 cut(s) 181, 444, 525
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 178, 441, 522
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 502, 541
BstSFI CTRYAG 1 cut(s) 725
BstUI CGCG 1 cut(s) 380
BsuI GTATCC 2 cut(s) 167, 285
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 528
BtsCI GGATG 2 cut(s) 369, 509
BtsIMutI CAGTG 2 cut(s) 129, 537
CaiI CAGNNNCTG 2 cut(s) 410, 542
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 476, 506
Cfr42I CCGCGG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 336, 706
CviJI RGCY 8 cut(s) 233, 291, 355, 469, 494, 650, 685, 704
CviKI_1 RGCY 8 cut(s) 233, 291, 355, 469, 494, 650, 685, 704
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 180, 443, 524
DpnII GATC 3 cut(s) 178, 441, 522
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 4 cut(s) 41, 243, 330, 594
EarI CTCTTC 4 cut(s) 41, 243, 330, 594
EciI GGCGGA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 476, 506
Eco57I CTGAAG 1 cut(s) 175
Eco72I CACGTG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 2 cut(s) 339, 709
FaiI YATR 4 cut(s) 138, 165, 337, 707
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 2 cut(s) 519, 524
FatI CATG 2 cut(s) 335, 705
FblI GTMKAC 2 cut(s) 102, 606
Fnu4HI GCNGC 2 cut(s) 378, 381
FokI GGATG 2 cut(s) 356, 496
Fsp4HI GCNGC 2 cut(s) 378, 381
FspBI CTAG 2 cut(s) 480, 686
GluI GCNGC 2 cut(s) 378, 381
HaeIII GGCC 1 cut(s) 469
HapII CCGG 5 cut(s) 141, 422, 503, 578, 597
Hin1II CATG 2 cut(s) 339, 709
HincII GTYRAC 2 cut(s) 103, 607
HindII GTYRAC 2 cut(s) 103, 607
HinfI GANTC 2 cut(s) 146, 608
HpaII CCGG 5 cut(s) 141, 422, 503, 578, 597
HphI GGTGA 4 cut(s) 16, 378, 670, 691
Hpy166II GTNNAC 2 cut(s) 103, 607
Hpy188I TCNGA 5 cut(s) 15, 161, 194, 430, 520
Hpy188III TCNNGA 2 cut(s) 118, 282
Hpy8I GTNNAC 2 cut(s) 103, 607
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 6 cut(s) 87, 274, 316, 425, 462, 479
HpyCH4III ACNGT 6 cut(s) 107, 133, 361, 538, 572, 679
HpyCH4IV ACGT 3 cut(s) 92, 269, 527
HpyCH4V TGCA 2 cut(s) 206, 219
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 3 cut(s) 92, 269, 527
Hsp92II CATG 2 cut(s) 339, 709
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 3 cut(s) 178, 441, 522
LguI GCTCTTC 1 cut(s) 41
LweI GCATC 2 cut(s) 193, 392
MaeI CTAG 2 cut(s) 480, 686
MaeII ACGT 3 cut(s) 92, 269, 527
MaeIII GTNAC 1 cut(s) 532
MalI GATC 3 cut(s) 180, 443, 524
MboI GATC 3 cut(s) 178, 441, 522
MboII GAAGA 7 cut(s) 28, 31, 181, 230, 317, 447, 581
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 2 cut(s) 253, 643
MluNI TGGCCA 1 cut(s) 469
MlyI GAGTC 2 cut(s) 140, 602
MnlI CCTC 5 cut(s) 37, 68, 383, 428, 597
Mox20I TGGCCA 1 cut(s) 469
Mph1103I ATGCAT 1 cut(s) 208
MscI TGGCCA 1 cut(s) 469
MseI TTAA 2 cut(s) 621, 674
MslI CAYNNNNRTG 2 cut(s) 29, 530
Msp20I TGGCCA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 5 cut(s) 141, 422, 503, 578, 597
MspR9I CCNGG 2 cut(s) 504, 543
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 380
NciI CCSGG 1 cut(s) 504
NdeII GATC 3 cut(s) 178, 441, 522
NlaIII CATG 2 cut(s) 339, 709
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 532
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 41
PctI GAATGC 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 2 cut(s) 379, 382
PleI GAGTC 2 cut(s) 140, 602
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 2 cut(s) 140, 602
Ppu21I YACGTR 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 541
PspCI CACGTG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 476, 506
PspPPI RGGWCCY 1 cut(s) 476
PstNI CAGNNNCTG 2 cut(s) 410, 542
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 29, 530
SacII CCGCGG 1 cut(s) 381
SalI GTCGAC 2 cut(s) 101, 605
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 621, 674
SatI GCNGC 2 cut(s) 378, 381
Sau3AI GATC 3 cut(s) 178, 441, 522
Sau96I GGNCC 2 cut(s) 476, 506
SchI GAGTC 2 cut(s) 140, 602
ScrFI CCNGG 2 cut(s) 504, 543
SfaNI GCATC 2 cut(s) 193, 392
SfcI CTRYAG 1 cut(s) 725
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 2 cut(s) 476, 506
SmiMI CAYNNNNRTG 2 cut(s) 29, 530
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 253, 643
SsiI CCGC 4 cut(s) 87, 378, 380, 389
SspMI CTAG 2 cut(s) 480, 686
StyD4I CCNGG 2 cut(s) 502, 541
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 6 cut(s) 107, 133, 361, 538, 572, 679
TaiI ACGT 3 cut(s) 95, 272, 530
TaqI TCGA 2 cut(s) 102, 606
TasI AATT 2 cut(s) 253, 643
TauI GCSGC 2 cut(s) 380, 383
Tru1I TTAA 2 cut(s) 621, 674
Tru9I TTAA 2 cut(s) 621, 674
TscAI CASTG 2 cut(s) 136, 537
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 125, 553
TspGWI ACGGA 2 cut(s) 186, 567
TspRI CASTG 2 cut(s) 136, 537
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 476, 506
XagI CCTNNNNNAGG 1 cut(s) 483
XceI RCATGY 1 cut(s) 339
XmiI GTMKAC 2 cut(s) 102, 606
XspI CTAG 2 cut(s) 480, 686
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.