Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

3244126 .. 3245962

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTTCTCCATGCTCATCGTGCTGTGCTTGCTCGCTTTACTCTTCCAGCATTCTCACTCCACGACAATACTAGTTGATGGAGTTTCAGAGTGGAAAAACCCAACTGTTCATGTAGGAGACTCCGTCATTTTCAAGCACACGTATCAGTACAACCTCTACATTTTCCAGAACCAAAGAGCCTTCGATCTCTGCAATTTCACTCAAGCCACTCTTCTCAGCAAACCTGACTCCACCTCCTTCACGTGGCACCCATCACGCACTGGTTTCTTCTACTTTGCCTTCAACAATGGCTCTCTGCTCAAAACATGCCAAAACACCCAGAAGCTGGCCATAACAGTCTCCTCCTCCTCCGCACCGCCGCCGCAGAGTTCCGGTTCAAGTTCAAGAATCTCTCCGCAGCTTCCTCCAACCGTGGCCCCAACACCGAAATCTGGTGGTGGTGGAGTTTCATCATCTCCAGTATTCCCATGGCCATTCCATCCTCGCCAAGTGGCATTAGCTCCCAGCCCACAACCAAGCGTAAGCTCTTCAGTGACAGATAAAGGAGGCGGCGGCGGTGGAATCCCATTCATTAACAGTAATCCTGCTGTTCCTTTGCCCACTGGTGAAGTGGATTCAACCACAATACGCCCTGTACCAACCTCTGGCCACCAGAGACAGGCGCTGGCGGGGTTATTTGCTGCTCAAATGGAATTGGCTCTGTTTTGTGTGGTTTTCCTGGTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

25.99

Weight (kDa)

9.18

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	2 cut(s)	328, 647
AciI	CCGC	9 cut(s)	354, 359, 362, 365, 398, 552, 555, 558, 671
AcoI	YGGCCR	3 cut(s)	330, 473, 649
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	152, 639
AfiI	CCNNNNNNNGG	5 cut(s)	246, 328, 434, 647, 661
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	5 cut(s)	136, 286, 381, 387, 621
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	4 cut(s)	328, 403, 503, 528
AluI	AGCT	4 cut(s)	328, 403, 503, 528
Alw26I	GTCTC	3 cut(s)	114, 346, 652
AlwNI	CAGNNNCTG	2 cut(s)	328, 667
AoxI	GGCC	4 cut(s)	330, 417, 473, 649
ApeKI	GCWGC	2 cut(s)	400, 683
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	620
BalI	TGGCCA	3 cut(s)	332, 475, 651
BanI	GGYRCC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	412, 670
BccI	CCATC	3 cut(s)	74, 262, 489
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	3 cut(s)	114, 346, 652
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	728
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	6 cut(s)	362, 365, 401, 553, 556, 684
BlsI	GCNGC	6 cut(s)	363, 366, 402, 554, 557, 685
Bme1390I	CCNGG	1 cut(s)	722
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	251, 420
BmrFI	CCNGG	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	189
BsaAI	YACGTR	2 cut(s)	144, 246
BsaJI	CCNNGG	2 cut(s)	414, 470
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 221, 251
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 328, 434, 647, 661
Bse1I	ACTGG	3 cut(s)	268, 461, 610
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	414, 470
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	5 cut(s)	246, 328, 434, 647, 661
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	3 cut(s)	268, 461, 610
BseRI	GAGGAG	3 cut(s)	334, 337, 340
BseXI	GCAGC	2 cut(s)	412, 670
BseYI	CCCAGC	1 cut(s)	506
BshFI	GGCC	4 cut(s)	332, 419, 475, 651
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	5 cut(s)	246, 328, 434, 647, 661
BsmAI	GTCTC	3 cut(s)	114, 346, 652
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	332, 419, 475, 651
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	9 cut(s)	354, 359, 362, 365, 398, 552, 555, 558, 671
BspANI	GGCC	4 cut(s)	332, 419, 475, 651
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	251, 420
BspQI	GCTCTTC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	268, 461, 610
BssECI	CCNNGG	2 cut(s)	414, 470
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	4 cut(s)	109, 340, 415, 581
Bst6I	CTCTTC	3 cut(s)	50, 219, 535
BstBAI	YACGTR	2 cut(s)	144, 246
BstC8I	GCNNGC	4 cut(s)	32, 36, 330, 669
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	414, 470
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	3 cut(s)	114, 346, 652
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 31
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	2 cut(s)	412, 670
BsuRI	GGCC	4 cut(s)	332, 419, 475, 651
BtgI	CCRYGG	2 cut(s)	414, 470
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	261, 540, 603
Cac8I	GCNNGC	4 cut(s)	32, 36, 330, 669
CaiI	CAGNNNCTG	2 cut(s)	328, 667
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	151, 638
CviAII	CATG	4 cut(s)	13, 113, 309, 471
CviQI	GTAC	2 cut(s)	151, 638
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	3 cut(s)	330, 473, 649
Eam1104I	CTCTTC	3 cut(s)	50, 219, 535
EarI	CTCTTC	3 cut(s)	50, 219, 535
Eco130I	CCWWGG	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	4 cut(s)	16, 116, 312, 474
FaiI	YATR	5 cut(s)	14, 114, 310, 335, 472
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	4 cut(s)	12, 112, 308, 470
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	6 cut(s)	362, 365, 401, 553, 556, 684
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	362, 365, 401, 553, 556, 684
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	6 cut(s)	362, 365, 401, 553, 556, 684
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	444
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	4 cut(s)	332, 419, 475, 651
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	16, 116, 312, 474
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HinfI	GANTC	5 cut(s)	122, 230, 390, 564, 617
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	169, 387
HpyAV	CCTTC	3 cut(s)	193, 250, 292
HpyCH4III	ACNGT	4 cut(s)	109, 340, 415, 581
HpyCH4IV	ACGT	2 cut(s)	143, 245
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 31
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	143, 245
Hsp92II	CATG	4 cut(s)	16, 116, 312, 474
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	412, 670
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	143, 245
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	37, 206, 262, 522
MlsI	TGGCCA	3 cut(s)	332, 475, 651
MluCI	AATT	2 cut(s)	196, 695
MluNI	TGGCCA	3 cut(s)	332, 475, 651
MlyI	GAGTC	2 cut(s)	116, 224
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	167, 247, 355, 358, 361, 417, 495, 542, 655
Mox20I	TGGCCA	3 cut(s)	332, 475, 651
MscI	TGGCCA	3 cut(s)	332, 475, 651
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	3 cut(s)	332, 475, 651
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	22, 31
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	16, 116, 312, 474
NlaIV	GGNNCC	2 cut(s)	251, 420
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	390, 564, 617
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	2 cut(s)	328, 647
PkrI	GCNGC	6 cut(s)	363, 366, 402, 554, 557, 685
PleI	GAGTC	2 cut(s)	116, 224
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	116, 224
Ppu21I	YACGTR	2 cut(s)	144, 246
Psp6I	CCWGG	1 cut(s)	720
PspCI	CACGTG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	251, 420
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	2 cut(s)	328, 667
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	152, 639
RsaNI	GTAC	2 cut(s)	151, 638
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	6 cut(s)	362, 365, 401, 553, 556, 684
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	2 cut(s)	116, 224
ScrFI	CCNGG	1 cut(s)	722
SfcI	CTRYAG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	196, 695
SsiI	CCGC	9 cut(s)	354, 359, 362, 365, 398, 552, 555, 558, 671
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	4 cut(s)	109, 340, 415, 581
TaiI	ACGT	2 cut(s)	146, 248
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	196, 695
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	4 cut(s)	364, 367, 555, 558
TfiI	GAWTC	3 cut(s)	390, 564, 617
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	3 cut(s)	268, 540, 610
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	400, 683
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	4 cut(s)	17, 101, 441, 562
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	268, 540, 610
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	2 cut(s)	328, 647
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	2 cut(s)	468, 610
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.