Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

34921120 .. 34923467

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAGTTCTCCATGTTCTTCTTCCTCTGTTTGCTCGCTTTACTCTTCCAGCATTCTCACTCCACCACAATACTAGTGGATGGAGTTTCAGAGTGGAAGAACCCTACTGTTCATGTAGGAGACTCCATCATTTTCAAGCACAAGTATCACTACAACCTCTACATTTTCCGGAACCAAAGAGCCTTCAATGTCTGCAATTTCACTCAAGCCACACTTCTTAATAAACCTGATTCCACATCCTATACGTGGCACCCATCACGGCCCGGTTTCTTCTACTTCTCCTTCAACAACGGTTCTCTGCTCAATACATGCCAAGACACACAAAAGCTTGCCATAAAAGTTGCTTTAACAACAATTGCTCCAGTGGCAGCCCCAGAACCCAGTTCCAAGACAGGTTCTGGCGGCAGTGGTGGTGGTGTAGTGTCATCTTCTCCAACATATCCATGGCCATTCCAACCTCACCAAGCTTCCTTATCGCCAAGTCCAGGGCCAAGTGTCGGCTCTTTAATTCCAAATAAAGGTGGTGGCATGCCATTTATCAACAGCAACCCTGCTGTTCCTTTGCCTACTGGTGAAGTCGATTCTGCTACAATTCGCCCTATACCAACATCTGGCCACCAGGGACAGGTGTTGGTGGGGTTATTTGCTGCGCAAATGGCTCTATTTAGTGTGGTTCTCTTGATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.72

Weight (kDa)

9.22

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	446, 613
AfiI	CCNNNNNNNGG	6 cut(s)	246, 485, 497, 518, 611, 625
AgsI	TTSAA	3 cut(s)	136, 187, 286
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	484, 618
AluBI	AGCT	2 cut(s)	328, 467
AluI	AGCT	2 cut(s)	328, 467
Alw26I	GTCTC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	4 cut(s)	260, 446, 488, 613
ApeKI	GCWGC	2 cut(s)	368, 647
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	261, 488
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	452, 584
BalI	TGGCCA	2 cut(s)	448, 615
BanI	GGYRCC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	380, 634
BccI	CCATC	3 cut(s)	74, 134, 262
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	486, 620
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	369, 403, 648
BlsI	GCNGC	3 cut(s)	370, 404, 649
Bme1390I	CCNGG	3 cut(s)	264, 486, 620
BmgT120I	GGNCC	2 cut(s)	261, 488
BmiI	GGNNCC	2 cut(s)	173, 251
BmrFI	CCNGG	3 cut(s)	264, 486, 620
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	672
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	443, 485, 619
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	6 cut(s)	246, 485, 497, 518, 611, 625
Bse1I	ACTGG	3 cut(s)	362, 381, 574
BseAI	TCCGGA	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	486, 620
BseDI	CCNNGG	3 cut(s)	443, 485, 619
BseGI	GGATG	2 cut(s)	85, 236
BseLI	CCNNNNNNNGG	6 cut(s)	246, 485, 497, 518, 611, 625
BseNI	ACTGG	3 cut(s)	362, 381, 574
BseXI	GCAGC	2 cut(s)	380, 634
BshFI	GGCC	4 cut(s)	262, 448, 490, 615
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	169, 264
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	6 cut(s)	246, 485, 497, 518, 611, 625
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	262, 448, 490, 615
Bsp13I	TCCGGA	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	4 cut(s)	262, 448, 490, 615
BspEI	TCCGGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	173, 251
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	362, 381, 574
BssECI	CCNNGG	3 cut(s)	443, 485, 619
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	486, 620
Bst4CI	ACNGT	2 cut(s)	109, 293
Bst6I	CTCTTC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	36, 330, 530
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	85, 236
BstHHI	GCGC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 656
BstNI	CCWGG	2 cut(s)	486, 620
BstNSI	RCATGY	2 cut(s)	312, 532
BstSCI	CCNGG	3 cut(s)	262, 484, 618
BstV1I	GCAGC	2 cut(s)	380, 634
BsuRI	GGCC	4 cut(s)	262, 448, 490, 615
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	85, 236
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	369, 412
Cac8I	GCNNGC	3 cut(s)	36, 330, 530
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	261, 488
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	5 cut(s)	13, 113, 309, 444, 529
EaeI	YGGCCR	2 cut(s)	446, 613
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	484, 618
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	5 cut(s)	16, 116, 312, 447, 532
FaiI	YATR	9 cut(s)	14, 114, 243, 310, 335, 439, 445, 530, 602
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	5 cut(s)	12, 112, 308, 443, 528
Fnu4HI	GCNGC	3 cut(s)	369, 403, 648
FokI	GGATG	2 cut(s)	92, 223
Fsp4HI	GCNGC	3 cut(s)	369, 403, 648
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	3 cut(s)	369, 403, 648
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	262, 448, 490, 615
HapII	CCGG	2 cut(s)	169, 264
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	5 cut(s)	16, 116, 312, 447, 532
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	2 cut(s)	326, 465
HinfI	GANTC	3 cut(s)	122, 230, 581
HpaII	CCGG	2 cut(s)	169, 264
HphI	GGTGA	2 cut(s)	452, 584
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	169, 679
HpyAV	CCTTC	2 cut(s)	193, 292
HpyCH4III	ACNGT	2 cut(s)	109, 293
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 656
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	5 cut(s)	16, 116, 312, 447, 532
HspAI	GCGC	1 cut(s)	650
Kpn2I	TCCGGA	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	380, 634
LweI	GCATC	1 cut(s)	672
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	245
MboII	GAAGA	6 cut(s)	10, 13, 37, 109, 262, 420
MfeI	CAATTG	1 cut(s)	354
MlsI	TGGCCA	2 cut(s)	448, 615
MluCI	AATT	4 cut(s)	196, 354, 507, 591
MluNI	TGGCCA	2 cut(s)	448, 615
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	458, 478
MnlI	CCTC	3 cut(s)	35, 167, 468
Mox20I	TGGCCA	2 cut(s)	448, 615
MroI	TCCGGA	1 cut(s)	168
MscI	TGGCCA	2 cut(s)	448, 615
MseI	TTAA	3 cut(s)	219, 347, 506
MslI	CAYNNNNRTG	1 cut(s)	442
Msp20I	TGGCCA	2 cut(s)	448, 615
MspI	CCGG	2 cut(s)	169, 264
MspR9I	CCNGG	3 cut(s)	264, 486, 620
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	486, 620
MwoI	GCNNNNNNNGC	2 cut(s)	365, 656
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	443
NlaIII	CATG	5 cut(s)	16, 116, 312, 447, 532
NlaIV	GGNNCC	2 cut(s)	173, 251
NsbI	TGCGCA	1 cut(s)	651
NspI	RCATGY	2 cut(s)	312, 532
PaeI	GCATGC	1 cut(s)	532
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	230, 581
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	370, 404, 649
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	484, 618
PspGI	CCWGG	2 cut(s)	484, 618
PspN4I	GGNNCC	2 cut(s)	173, 251
PspPI	GGNCC	2 cut(s)	261, 488
PstNI	CAGNNNCTG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	219, 347, 506
SatI	GCNGC	3 cut(s)	369, 403, 648
Sau96I	GGNCC	2 cut(s)	261, 488
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	264, 486, 620
SetI	ASST	9 cut(s)	159, 229, 248, 330, 397, 460, 469, 523, 630
SfaNI	GCATC	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	73
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	196, 354, 507, 591
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	262, 484, 618
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	109, 293
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	579
TasI	AATT	4 cut(s)	196, 354, 507, 591
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	2 cut(s)	230, 581
Tru1I	TTAA	3 cut(s)	219, 347, 506
Tru9I	TTAA	3 cut(s)	219, 347, 506
TscAI	CASTG	2 cut(s)	369, 412
TseI	GCWGC	2 cut(s)	368, 647
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	2 cut(s)	369, 412
Van91I	CCANNNNNTGG	1 cut(s)	611
XceI	RCATGY	2 cut(s)	312, 532
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 441
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.