FvH4_2g13650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010509
Physical Location & Seq
Forward (+)
11932374 .. 11934681
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13650.t1

Sequence Viewer

Length: 702 bp
ATGAAGTTCTCCATGTTCTTCTTCCTGGGTTTGCTCTCTTTACTCTTCCAGCATTCTCACTCCACCACAATGCTGGTAGATGGAATTTCAGAGTGGAAAAACCCTACTGTTCATGTAGGAGACTCCATCATTTTCCAGCATAAGTATCACTACAACCTCTACATTTTCCAGAACCAAGGAGCCTTCAATGTCTGCAATTTCACTCAAGCCACACTTCTTAACAAACCCGATTCCACATCCTATACGTGGCACCCATCACGGCCTGGCTTCTTCTACTTCTCCTTCAGCAATGGTTCTCTGCTCAATACATGCCAAGACACTCAAAAGCTTGCTATAAGAGTTTCTTTAACAACAATGGCTCCAGTGGCTGCCCCAGAACCCAGTTCCAAGACAGGTTCTGGTGGCCGGGGAGGCAGTGGTGGTGGTGTAGTGTCATCTTCTCCAACATATCCATGGCCTTTCCAGCCTCACCAAGCTTCCTTATCGCCAAGTCCAGAGCCAAGTGTCGGCTCTTTACTTCCAAATAAAGGTGGTGGCATGCCATTTATCAACAGCAACCCTGCTGTTCCTCTGCCTACTGGTGAAGTCGATTCTGCTACAATCCGCCCTATACCTACCTCTGGCCACCAAGGACAGCAGGTGTTGGTGGGGTTATTTGCTGCTCAAATGGCTCTATTTAGTGTGGTTCTCTTGATGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.1

Weight (kDa)

8.59

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 249
AciI CCGC 1 cut(s) 604
AcoI YGGCCR 2 cut(s) 403, 622
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 268
AfiI CCNNNNNNNGG 4 cut(s) 246, 506, 527, 620
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 2 cut(s) 24, 262
AluBI AGCT 2 cut(s) 328, 476
AluI AGCT 2 cut(s) 328, 476
Alw26I GTCTC 1 cut(s) 114
AlwNI CAGNNNCTG 2 cut(s) 368, 398
AoxI GGCC 4 cut(s) 260, 403, 455, 622
ApeKI GCWGC 2 cut(s) 368, 659
ApoI RAATTY 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 461, 593
BalI TGGCCA 1 cut(s) 624
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 355, 646
BccI CCATC 3 cut(s) 74, 134, 262
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 26, 264
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 628
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 2 cut(s) 369, 660
BlsI GCNGC 2 cut(s) 370, 661
Bme1390I CCNGG 3 cut(s) 26, 264, 407
BmiI GGNNCC 3 cut(s) 181, 251, 360
BmrFI CCNGG 3 cut(s) 26, 264, 407
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 25, 175, 406, 452, 628
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 506, 527, 620
Bse1I ACTGG 3 cut(s) 362, 381, 583
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 26, 264
BseDI CCNNGG 5 cut(s) 25, 175, 406, 452, 628
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 4 cut(s) 246, 506, 527, 620
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 3 cut(s) 362, 381, 583
BseXI GCAGC 2 cut(s) 355, 646
BshFI GGCC 4 cut(s) 262, 405, 457, 624
BshNI GGYRCC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 4 cut(s) 246, 506, 527, 620
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 4 cut(s) 262, 405, 457, 624
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 604
BspANI GGCC 4 cut(s) 262, 405, 457, 624
BspLI GGNNCC 3 cut(s) 181, 251, 360
BspMI ACCTGC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 3 cut(s) 362, 381, 583
BssECI CCNNGG 5 cut(s) 25, 175, 406, 452, 628
BssT1I CCWWGG 3 cut(s) 175, 452, 628
Bst2UI CCWGG 2 cut(s) 26, 264
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 330, 539
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 365, 411, 463, 668
BstNI CCWGG 2 cut(s) 26, 264
BstNSI RCATGY 2 cut(s) 312, 541
BstSCI CCNGG 3 cut(s) 24, 262, 405
BstV1I GCAGC 2 cut(s) 355, 646
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuRI GGCC 4 cut(s) 262, 405, 457, 624
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 369, 421
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 330, 539
CaiI CAGNNNCTG 2 cut(s) 368, 398
CviAII CATG 5 cut(s) 13, 113, 309, 453, 538
EaeI YGGCCR 2 cut(s) 403, 622
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 593
Eco130I CCWWGG 3 cut(s) 175, 452, 628
Eco57I CTGAAG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 24, 262
EcoT14I CCWWGG 3 cut(s) 175, 452, 628
ErhI CCWWGG 3 cut(s) 175, 452, 628
FaeI CATG 5 cut(s) 16, 116, 312, 456, 541
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 328, 360
FatI CATG 5 cut(s) 12, 112, 308, 452, 537
Fnu4HI GCNGC 2 cut(s) 369, 660
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 369, 660
GluI GCNGC 2 cut(s) 369, 660
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 4 cut(s) 262, 405, 457, 624
HapII CCGG 1 cut(s) 406
Hin1II CATG 5 cut(s) 16, 116, 312, 456, 541
HindIII AAGCTT 2 cut(s) 326, 474
HinfI GANTC 3 cut(s) 122, 230, 590
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 461, 593
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 169, 494, 691
HpyAV CCTTC 2 cut(s) 193, 292
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 411, 463, 668
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 5 cut(s) 16, 116, 312, 456, 541
LmnI GCTCC 2 cut(s) 179, 364
Lsp1109I GCAGC 2 cut(s) 355, 646
LweI GCATC 1 cut(s) 684
MaeII ACGT 1 cut(s) 245
MboII GAAGA 5 cut(s) 10, 13, 37, 262, 429
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 2 cut(s) 84, 196
MluNI TGGCCA 1 cut(s) 624
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 167, 404, 477, 579, 628
Mox20I TGGCCA 1 cut(s) 624
MscI TGGCCA 1 cut(s) 624
MseI TTAA 2 cut(s) 219, 347
MslI CAYNNNNRTG 2 cut(s) 68, 451
Msp20I TGGCCA 1 cut(s) 624
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 3 cut(s) 26, 264, 407
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 2 cut(s) 26, 264
MwoI GCNNNNNNNGC 4 cut(s) 365, 411, 463, 668
NciI CCSGG 1 cut(s) 407
NcoI CCATGG 1 cut(s) 452
NlaIII CATG 5 cut(s) 16, 116, 312, 456, 541
NlaIV GGNNCC 3 cut(s) 181, 251, 360
NspI RCATGY 2 cut(s) 312, 541
PaeI GCATGC 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 628
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 230, 590
PkrI GCNGC 2 cut(s) 370, 661
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 24, 262
PspGI CCWGG 2 cut(s) 24, 262
PspN4I GGNNCC 3 cut(s) 181, 251, 360
PstNI CAGNNNCTG 2 cut(s) 368, 398
RseI CAYNNNNRTG 2 cut(s) 68, 451
SaqAI TTAA 2 cut(s) 219, 347
SatI GCNGC 2 cut(s) 369, 660
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 26, 264, 407
SetI ASST 9 cut(s) 159, 248, 330, 397, 478, 532, 616, 620, 642
SfaNI GCATC 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 68, 451
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 1 cut(s) 541
Sse9I AATT 2 cut(s) 84, 196
SsiI CCGC 1 cut(s) 604
StyD4I CCNGG 3 cut(s) 24, 262, 405
StyI CCWWGG 3 cut(s) 175, 452, 628
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 588
TasI AATT 2 cut(s) 84, 196
TfiI GAWTC 2 cut(s) 230, 590
Tru1I TTAA 2 cut(s) 219, 347
Tru9I TTAA 2 cut(s) 219, 347
TscAI CASTG 2 cut(s) 369, 421
TseI GCWGC 2 cut(s) 368, 659
TspDTI ATGAA 2 cut(s) 17, 101
TspRI CASTG 2 cut(s) 369, 421
XapI RAATTY 1 cut(s) 84
XceI RCATGY 2 cut(s) 312, 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.