Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

2968373 .. 2971029

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G031400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGCTCTCCATGCTCATCTTCCTGTGTTTGCTCTCTTTTCTCTTCCAGCATTCTCACTCCACCACAATACTAGTAGATGGGGTTTCAGAGTGGAAAAACCCCACTGTTCATGTAGGAGACTCCATCATTTTTAAGCACAAGTATCAGCACAACCTCTACATTTTCCAGAACCAAAGAGCCTTCGATCTCTGCAATTTCACTCAAGCCACACTTCTTAACAAACCTGACTCCACCTCCTACACGTGGCACCCTTCACGCCCTGGTTTCTTCTACTTTGCCTTCAACAATGGCTCTATGCTCAAAACATGCCAAGAGACCCAAAAGCTGGCTATCAGAGTCACCTCCTCTTCCTCAGCAGCAGCACCACCAGGAAGTTCAAGTTCAACAACAACTTCTCCACAGCTTCCTCCAATGGCTTCCCCAACACCAAGCTCGGGTGGAGGAGGAGCAGTGTCATCTTCTCCATCATATCCATGGCCATTCCACCCTCGCCAAGTTTCTTTCTCTCCCAGCCCACAACCAAGCGTGAGTTCTTCAGTGGCTGTACCAGACAAAGGTGGTGGTCGTGGTATGCCATTTATTAACAGCAACCCTGCAGTTCCTCTGCCTACTGGTGAAGTTGACTCTGCTACAATACGCCCTTTACCAACTTCTGGCCAACAGGGGCAGGTGTTGGTGGGGTTATTTGCTCTTCAAATGGAAATGGCTCTATTTTGTGTGGTTTTTTTCCTGATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.68

Weight (kDa)

8.96

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	2 cut(s)	328, 656
AcoI	YGGCCR	2 cut(s)	479, 658
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	5 cut(s)	246, 328, 437, 557, 656
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	4 cut(s)	286, 381, 387, 698
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	262, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	517, 549
AluBI	AGCT	4 cut(s)	7, 328, 406, 435
AluI	AGCT	4 cut(s)	7, 328, 406, 435
Alw26I	GTCTC	2 cut(s)	114, 311
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	2 cut(s)	479, 658
ApeKI	GCWGC	2 cut(s)	359, 362
AsuHPI	GGTGA	2 cut(s)	334, 629
AvaI	CYCGRG	1 cut(s)	436
BalI	TGGCCA	2 cut(s)	481, 660
BanI	GGYRCC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	371, 374
BccI	CCATC	3 cut(s)	74, 134, 475
BciT130I	CCWGG	2 cut(s)	264, 372
BcoDI	GTCTC	2 cut(s)	114, 311
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	2 cut(s)	264, 372
BmeT110I	CYCGRG	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	264, 372
BmsI	GCATC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	262, 476
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 382, 412, 438, 468
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 328, 437, 557, 656
Bse1I	ACTGG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	264, 372
BseDI	CCNNGG	2 cut(s)	262, 476
BseLI	CCNNNNNNNGG	5 cut(s)	246, 328, 437, 557, 656
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	3 cut(s)	337, 459, 462
BseXI	GCAGC	2 cut(s)	371, 374
BseYI	CCCAGC	1 cut(s)	512
BshFI	GGCC	2 cut(s)	481, 660
BshNI	GGYRCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	436
BslI	CCNNNNNNNGG	5 cut(s)	246, 328, 437, 557, 656
BsmAI	GTCTC	2 cut(s)	114, 311
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	481, 660
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	476
BspANI	GGCC	2 cut(s)	481, 660
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	661
BspQI	GCTCTTC	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	262, 476
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	2 cut(s)	264, 372
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	50, 355, 699
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	476
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	114, 311
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	264, 372
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	262, 370
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	371, 374
BsuRI	GGCC	2 cut(s)	481, 660
BtgI	CCRYGG	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	3 cut(s)	105, 459, 546
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	548
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	4 cut(s)	13, 113, 309, 477
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	2 cut(s)	479, 658
Eam1104I	CTCTTC	3 cut(s)	50, 355, 699
EarI	CTCTTC	3 cut(s)	50, 355, 699
Eco130I	CCWWGG	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	262, 370
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	4 cut(s)	16, 116, 312, 480
FaiI	YATR	7 cut(s)	14, 114, 299, 310, 472, 478, 575
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	4 cut(s)	12, 112, 308, 476
Fnu4HI	GCNGC	2 cut(s)	360, 363
Fsp4HI	GCNGC	2 cut(s)	360, 363
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	360, 363
GsaI	CCCAGC	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	481, 660
Hin1II	CATG	4 cut(s)	16, 116, 312, 480
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	4 cut(s)	122, 230, 339, 626
HphI	GGTGA	2 cut(s)	334, 629
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	2 cut(s)	91, 338
Hpy188III	TCNNGA	2 cut(s)	169, 733
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	3 cut(s)	193, 264, 292
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	195, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	16, 116, 312, 480
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	2 cut(s)	371, 374
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	7 cut(s)	13, 37, 262, 342, 453, 528, 686
MlsI	TGGCCA	2 cut(s)	481, 660
MluCI	AATT	1 cut(s)	196
MluNI	TGGCCA	2 cut(s)	481, 660
MlyI	GAGTC	4 cut(s)	116, 224, 348, 620
Mox20I	TGGCCA	2 cut(s)	481, 660
MscI	TGGCCA	2 cut(s)	481, 660
MseI	TTAA	3 cut(s)	135, 219, 585
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	2 cut(s)	481, 660
MspR9I	CCNGG	2 cut(s)	264, 372
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	264, 372
MwoI	GCNNNNNNNGC	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	16, 116, 312, 480
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	699
PctI	GAATGC	1 cut(s)	52
PflMI	CCANNNNNTGG	2 cut(s)	328, 656
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	4 cut(s)	116, 224, 347, 620
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	4 cut(s)	116, 224, 347, 620
Ppu21I	YACGTR	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	262, 370
PspCI	CACGTG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	262, 370
PspN4I	GGNNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	3 cut(s)	135, 219, 585
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	4 cut(s)	116, 224, 348, 620
ScrFI	CCNGG	2 cut(s)	264, 372
SfaNI	GCATC	1 cut(s)	726
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	262, 370
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	135, 219, 585
Tru9I	TTAA	3 cut(s)	135, 219, 585
TscAI	CASTG	3 cut(s)	112, 459, 546
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	359, 362
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	17, 101
TspRI	CASTG	3 cut(s)	112, 459, 546
Van91I	CCANNNNNTGG	2 cut(s)	328, 656
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.