Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010509

Physical Location & Seq

Genomic Coordinates Reverse (-)

4279636 .. 4281433

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1026900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTTCTCCATGCTCGTCTTCCTGAGCTTGCTCTCTTTCCTCTTCCAGCATTCTCACTCCACCACAATACTAGTTGATGGAGTTTCAGAGTGGAAAAACCCAACTGTTCATGTGGGAGACTCCGTCATTTTCAAGCACAAGTATCAGTACAGCCTCTACATTTTCCAGAACCAAAGGGCTTTCGATCTCTGCAATTTCACTCAAGCCACCCTACTTACCAAACCTGACTCCACCTCCTTCACGTGGCACCCATCACGCACTGGTTTCTTCTACTTTGCCTTCAACAATGCCTCTCTGCTCAAAACATGCCAAAACACCCAAAAGCTGGCCATTACAGTCTCCTCCTCCGCACCGCCGCCGAAAAGTTCAAGTTCAAGTTCAAGTTCACCAATCTCTCCGGAGCTTCCTCCAACGGCGGCCCCAACTCCGAAACCTGGTGGTGGAGGAGCATCTTCTCCAGTATTCCCATGGCCATTCCATCCTCGCCAAGTGGCCTTATCTCCCAGTCCACAACCAAGCGTAAGTTCTTCAGTGACGGATAAAGGCGGCGGTGGAGGCGGAATCCCATTTATTAATAGTAATCCTGCTGTTCCTCTGCCTACTGGTGAAGTGGATTCTGCTACAATACACCCTGTACCAACCTCTGGCCACCAGAGACAGGTGTTGGTGGGGTTATTTTCTGCTCAAATGGAATTGGCTCTATTTTATGTGGTTTTCCTGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.17

Weight (kDa)

9.15

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21090 AT1G21090
fragaria_vesca	FvH4_2g13650 FvH4_2g13650
malus_domestica	MD05G1026900.v1.1 MD10G1026200.v1.1
prunus_persica	Prupe.8G031400_v2.0.a1
pyrus_communis	pycom05g01870 pycom10g01760 pycom10g01770
rosa_chinensis	RchiOBHm_Chr6g0275291
rosa_laevigata	RLG00000013475
rosa_multiflora	Rmu_co8482861.1_g000001 Rmu_sc0005558.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193430
rosa_rugosa	Rorug06G0090900
rosa_samantha	Rh6AG204500 Rh6BG207300 Rh6CG209900 Rh6DG200300
rosa_wichuraiana	Rw6G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	2 cut(s)	328, 647
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	7 cut(s)	351, 356, 359, 419, 549, 552, 561
AcoI	YGGCCR	3 cut(s)	330, 473, 649
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	152, 639
AfiI	CCNNNNNNNGG	6 cut(s)	246, 328, 437, 443, 647, 661
AgsI	TTSAA	5 cut(s)	136, 286, 372, 378, 384
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	3 cut(s)	30, 328, 406
AluI	AGCT	3 cut(s)	30, 328, 406
Alw26I	GTCTC	3 cut(s)	114, 346, 652
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	5 cut(s)	330, 420, 473, 495, 649
AseI	ATTAAT	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	381, 620
BalI	TGGCCA	3 cut(s)	332, 475, 651
BanI	GGYRCC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	13
BccI	CCATC	3 cut(s)	74, 262, 489
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	3 cut(s)	114, 346, 652
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	359, 420, 550
BlsI	GCNGC	3 cut(s)	360, 421, 551
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	251, 423
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 221, 251
Bsc4I	CCNNNNNNNGG	6 cut(s)	246, 328, 437, 443, 647, 661
Bse1I	ACTGG	4 cut(s)	268, 461, 507, 610
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	6 cut(s)	246, 328, 437, 443, 647, 661
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	4 cut(s)	268, 461, 507, 610
BseRI	GAGGAG	3 cut(s)	334, 337, 462
BshFI	GGCC	5 cut(s)	332, 422, 475, 497, 651
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	6 cut(s)	246, 328, 437, 443, 647, 661
BsmAI	GTCTC	3 cut(s)	114, 346, 652
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	5 cut(s)	332, 422, 475, 497, 651
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	7 cut(s)	351, 356, 359, 419, 549, 552, 561
BspANI	GGCC	5 cut(s)	332, 422, 475, 497, 651
BspCNI	CTCAG	1 cut(s)	18
BspEI	TCCGGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	251, 423
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	4 cut(s)	268, 461, 507, 610
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	109, 340
Bst6I	CTCTTC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	32, 330
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	3 cut(s)	114, 346, 652
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	5 cut(s)	332, 422, 475, 497, 651
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	261, 540
Cac8I	GCNNGC	2 cut(s)	32, 330
Cfr13I	GGNCC	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	151, 638
CviAII	CATG	4 cut(s)	13, 113, 309, 471
CviQI	GTAC	2 cut(s)	151, 638
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	3 cut(s)	330, 473, 649
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	4 cut(s)	16, 116, 312, 474
FaiI	YATR	5 cut(s)	14, 114, 310, 472, 711
FatI	CATG	4 cut(s)	12, 112, 308, 470
Fnu4HI	GCNGC	3 cut(s)	359, 420, 550
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	359, 420, 550
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	3 cut(s)	359, 420, 550
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	5 cut(s)	332, 422, 475, 497, 651
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	4 cut(s)	16, 116, 312, 474
HinfI	GANTC	4 cut(s)	122, 230, 564, 617
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	381, 620
Hpy166II	GTNNAC	2 cut(s)	389, 512
Hpy188I	TCNGA	2 cut(s)	91, 432
Hpy188III	TCNNGA	4 cut(s)	25, 169, 401, 721
Hpy8I	GTNNAC	2 cut(s)	389, 512
HpyAV	CCTTC	2 cut(s)	250, 292
HpyCH4III	ACNGT	2 cut(s)	109, 340
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	16, 116, 312, 474
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	403, 449
LweI	GCATC	1 cut(s)	461
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	5 cut(s)	13, 37, 262, 447, 522
MlsI	TGGCCA	3 cut(s)	332, 475, 651
MluCI	AATT	2 cut(s)	196, 695
MluNI	TGGCCA	3 cut(s)	332, 475, 651
MlyI	GAGTC	2 cut(s)	116, 224
MmeI	TCCRAC	1 cut(s)	437
Mox20I	TGGCCA	3 cut(s)	332, 475, 651
MroI	TCCGGA	1 cut(s)	400
MscI	TGGCCA	3 cut(s)	332, 475, 651
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	3 cut(s)	332, 475, 651
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	16, 116, 312, 474
NlaIV	GGNNCC	2 cut(s)	251, 423
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	1 cut(s)	312
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	564, 617
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	2 cut(s)	328, 647
PkrI	GCNGC	3 cut(s)	360, 421, 551
PleI	GAGTC	2 cut(s)	116, 224
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	116, 224
Ppu21I	YACGTR	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	436
PspCI	CACGTG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	251, 423
PspPI	GGNCC	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	152, 639
RsaNI	GTAC	2 cut(s)	151, 638
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	3 cut(s)	359, 420, 550
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	116, 224
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	9 cut(s)	32, 229, 239, 248, 330, 408, 439, 647, 666
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	196, 695
SsiI	CCGC	7 cut(s)	351, 356, 359, 419, 549, 552, 561
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	109, 340
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	196, 695
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	361, 422, 552
TfiI	GAWTC	2 cut(s)	564, 617
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	268, 540
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	17, 101
TspGWI	ACGGA	2 cut(s)	115, 554
TspRI	CASTG	2 cut(s)	268, 540
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	2 cut(s)	328, 647
VspI	ATTAAT	1 cut(s)	576
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.